BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12320.1
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928955 jgi|Araly1|928955|scaffold_301412.1 1330 0.0
> Ahg928955 jgi|Araly1|928955|scaffold_301412.1
Length=865
Score = 1330 bits (720), Expect = 0.0
Identities = 784/816 (96%), Gaps = 0/816 (0%)
Strand=Plus/Plus
Query 220 TGAAGAGCTTGTTGTGCCTAATTATCAAGAATCATCATCAGAGACATACCCATCTACTGG 279
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 50 TGAAGAGCTTGTTGTGCCTAGTTATCAAGAATCATCATCAGAGACATACCCATCTACTGG 109
Query 280 TATGTGGGGTGGATGGAGCATGAGCTCCCCTGAAGCAGCTGAGAAATGTTTCGATTACGA 339
||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 110 TATGTGGGGTGGATGGAGCATGAGCTCTCCTGAAGTAGCTGAGAAATGTTTCGATTACGA 169
Query 340 TGGTTTCAATGGAGAAGGAATGATGTATAGTCAGATGAGTATGAGGACTAGTGAAGAAGA 399
||| |||||||||| |||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 170 TGGATTCAATGGAGGAGGAATGATGTATAGTCAGATGGGTATGAGGACAAGTGAAGAAGA 229
Query 400 AGAAGAGTCTAAAAGATCAAAGGCTTTCTATGGTGCTTCTTCACTTCACGATTTCGAAGG 459
|||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||
Sbjct 230 AGAAGAGTCTAAGAGATCTAAGGCTTTCTACGGTGCTTCTTCACTTCATGATTTCGAAGG 289
Query 460 CATCGAACAGATGGATGATATGTTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA 519
|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 290 AATTGAACAGATGGATGATATATTCTTAAGTTCAATTTTGGAGGATGTTCCAGAGGATGA 349
Query 520 TGGAGATGTTCACCGCGCGACCAGTAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG 579
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 350 TGGAGATGTTCACCGTGCGTCCAGCAGCAATAACAGTGTCGGTTCTTCTTCTATGTATGG 409
Query 580 TGGTGGTAGGGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC 639
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 TGGTGGTAGAGAAGTCCCTATGTTCCATTGTCATGACATGTCTTTCAAGGAGGAAGCTCC 469
Query 640 ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAACT 699
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 470 ATTTACAATCTCGGATCTGTCTGAAGAGAACATGTTAGATTCAAACTATGGGGATGAATT 529
Query 700 GTCTTCTGAAGAATTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACTGATGA 759
||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 530 GTCTTCTGAAGAACTCGTGTTGCAGGATCTACAAAGGGCTTCACAAAAGTTGACCGATGA 589
Query 760 GACACGCAAATGTTTCCGGGATACTTTTTACCGACTTGCAAGGAGCTCACAAGATAAATC 819
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 590 GACACGCAAATGTTTCCGGGATACCTTTTACCGACTTGCAAGGAGCTCGCAAGATAACTC 649
Query 820 TGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTATGCAAACGTCTAGATATGATTATGG 879
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 650 GGATTCAGTCAGCCCCAACTCGGAAGAGCTGCTTGTGCAAACGTCTAGATATGATTATGG 709
Query 880 TGATGGAAACAGGTTTAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG 939
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 TGATGGAAACAGGTTGAGTAGAGAGGAAGAGATAGAATCTGAAACGAATTCAATCGATAG 769
Query 940 AGCTGTCGCAAACCTCACATTCAACAAAATGGAATCCAACATAAGCAATTTTCCTCTGTC 999
||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 770 AGCCGTCGCAAACCTCACATTTAACAAAATGGAATCCAACATAAGCAATTTTCCGCTGTC 829
Query 1000 GGAAAGAGTACAGTAGCTGCCGCTGATCAAGATCAA 1035
||| ||||||||||||||||| ||||||||||||||
Sbjct 830 GGAGAGAGTACAGTAGCTGCCACTGATCAAGATCAA 865
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45480639981
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5