BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12340.1
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318010 jgi|Araly1|318010|fgenesh1_pm.C_scaffold_3001026 2106 0.0
> Ahg318010 jgi|Araly1|318010|fgenesh1_pm.C_scaffold_3001026
Length=1962
Score = 2106 bits (1140), Expect = 0.0
Identities = 1333/1425 (94%), Gaps = 17/1425 (1%)
Strand=Plus/Plus
Query 151 AGGCAACATTGGGCCATGGTACTGCAACCAATAGAAGCATTCTACAGTGTAACGTTGGGA 210
|||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 539 AGGCGACATTGGGCCATGGTACTGCAACCATTAAAAGCATTCTACAGTGTAACGTTGGGA 598
Query 211 ACAAAAGTCCCCTCTTGTTATGTGTCTTGACTCCTGATAAAGTTGATTCTTGCCAATTGA 270
||||||||||||||||||||||||||||| |||| || || ||||||||||||||| |||
Sbjct 599 ACAAAAGTCCCCTCTTGTTATGTGTCTTGTCTCCCGACAAGGTTGATTCTTGCCAACTGA 658
Query 271 ATCTGGAGTTTGAAGAAACTGATGAGGTTATCTTCTCTGTCATCGGACCTCGGAGTGTAC 330
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 659 ATCTGGAGTTTGAAGAAACTGATGAAGTTATCTTCTCTGTCATCGGACCTCGGAGTGTTC 718
Query 331 ACCTCACTGGCTACTTCCTCGGAAGGAGTACCGGGTTTAGGCCAAATGATGATGAATCAG 390
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 719 ACCTCACTGGCTACTTCCTCGGAAGGAGTACCGCTTTTAGGCCAAATGATGATGAATCAG 778
Query 391 AGTCATTTGGAGAAGACATTGTTGACACAGACATGGAGAAAGGTAGCAGTGATGATTATG 450
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AGTCATATGGAGAAGACATTGTTGACACAGACATGGAGAAAGGTAGCAGTGATGATTATG 838
Query 451 ACTACAGTGATAGTTTCATTAACGACGACGATCCAGC-TGTCCGTGGTTCACACGTGTCT 509
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 839 ACTACAGTGATAGTTTCATTAACGACGACGATCC-GCGTGGCCGTGGTTCACACGTGTCT 897
Query 510 AGTACTGATGATGATGAAATATCTATTAAGGAGATGACAGCTAAAACAAAAGAGAAGaaa 569
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 898 AGTACTGATGATGATGAAATATCTATTAAGGAGATGGCAGCTAAAACAAAAGACAAGAAA 957
Query 570 aaaaaTGGAAAAGGTAGAAGACTAAGGAAGAAGTTTCAAGTTTCTGATTCAGATTCTGAT 629
|||||||||| ||| |||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 958 AAAAATGGAAGTGGTGGAAGGCTAAGGAAGAAGTTTCAAGTCTCTGATTCAGATTCTGAT 1017
Query 630 GAAACTTCGGCTAGAGCTGATGAATCTAGCAATGAGGATTCTGTAGAAGTACTTAACAAT 689
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 1018 GAAACTTCGGCTAGAGCTGGTGAATCTAGCAATGAGGATTCTGTAGAAATACTTAACAAT 1077
Query 690 GGTAATGAGCCCAAGATCGCGAAGGTCCATTCTTCAGAGAGTCCTCTGCCTTCAAGGGTT 749
|||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||||
Sbjct 1078 GGTAATGAGCCCAAGATCGCCAAGGTCCTTTCTTCAGAGAGTCCTCTACCTTCAAGGGTT 1137
Query 750 ACGAGGTCGAAGGCAAGAAAATCGACTTTGGAAAGTGGTGAGCCT---GCCAAGTGTGAG 806
||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||
Sbjct 1138 ACGAGGTCGAAGGCAAGAAGTTCGACTTTGGAAAATGGTGAGCCTAATGCCAAGTGTGAG 1197
Query 807 AAGACATTTGAAGCAAAAATTAATACTCACAAGACTCTGGATAATAGGGAGGATAAACCA 866
||||||| || | || || | |||||||||||||||| ||||| ||| | |||||| ||
Sbjct 1198 AAGACATCAGATGGAAGAACTCATACTCACAAGACTCTAGATAAAAGGCAAGATAAATCA 1257
Query 867 TTGGATGATGCTAAACTGTCTCCCGTCCAGAAAGACTGTGAAATTCTTTCGAAGaaaaaa 926
|||| ||||| |||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1258 TTGGGTGATGTTAAACTTTCTCCCGTCCAGAAAGGCTGTGAAATTCTTTCGAAGAAAAAA 1317
Query 927 aGAAACAAGGAAAGGTCTAAGAGTTCAGCTATAATTATTGACTCAGATGACGGAGAGGGG 986
||||||||||| ||||||||||| ||||||||||| ||| ||||||||||| |||||||
Sbjct 1318 AGAAACAAGGATAGGTCTAAGAGCTCAGCTATAATCATTAACTCAGATGACAAAGAGGGG 1377
Query 987 AAAAATATGCCTGAAAGTCTTCAGAATGAGAATCCAGTTTCTGACAAGGGGATCAAATCA 1046
|||||||| |||| |||||||||||||||||| |||||| ||||| ||||||||||||||
Sbjct 1378 AAAAATATACCTGGAAGTCTTCAGAATGAGAAGCCAGTTACTGACGAGGGGATCAAATCA 1437
Query 1047 TCAAGTGATGTATTACTTTCTCAGAATGGTGATGCAACTCTATCAAAGAAAAAGAAGAAA 1106
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1438 TCAAGTGATGTATTACTCTCTCAGAATGGTGATGCAACTCTATCAAAGAAAAAGAGGAAA 1497
Query 1107 AGGGATAGGAGAGAGGAAACTACAGATGTCCC-G--------G---AATGTCCAGAGAAG 1154
|||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 1498 AGGGATAGGAGAGAGGAAACTACAGATGTCCCAGAAAATCTAGTTGAATGTCCAGAGAAG 1557
Query 1155 AAGAAACAAGCTATCGACAAGAACATCGAGAAAGAAGCTGGTACTAAGAAACCACTAGAA 1214
||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||
Sbjct 1558 AAGAAACAAGCTATCGACATGAACATCGAGAAAGAAGTTGGTACTAAGAATCCACTAGAA 1617
Query 1215 ACGAGGACTTTATCAAATGGAGTGATCATTGAAGATATTGAAAAAGGAAAGTTAGATGGA 1274
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1618 ACGAGGACTTTATCAAATGGAGTGATCATTGAAGAGATTGAAAAAGGAAAGTTAGATGGA 1677
Query 1275 AAATCAGCTGTTAAAGGGAAAAAGGTCAGTATACTCTATACTGGGAAGTTGAAAGACACC 1334
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1678 AAATCAGCTGTTAAAGGGAAAAAGGTCAGTATACTCTATATTGGGAAGTTGAAAGACACT 1737
Query 1335 GGGAACTTGTTTGATTCAAACTTGGGAGAAGATCCACTAAGATTCCGCTTAGGTGGAGAA 1394
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1738 GGGAAATTGTTTGATTCAAACTTGGGAGAAGCTCCACTAAGATTCCGCTTAGGTGGAGAA 1797
Query 1395 AATGTCATAGAAGGTCTCAGCATTGGTGTTGAAGGAATGCGAGTTGGTGATAAGAGAAGA 1454
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1798 AATGTCATAGAAGGTATCAGCATTGGTGCTGAAGGAATGCGAGTTGGTGATAAGAGAAGA 1857
Query 1455 CTCATAATACCGCCAGCCCTCGGGTACTCAAAAAGGGGATTGAAGGAAAAGGTGCCTAAG 1514
|||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1858 CTCATAATTCCGCCATCCCTCGGGTACTCAAAAAAGGGATTGAAGGAAAAGGTGCCTAAG 1917
Query 1515 AGTGCGTGGCTTGTCTATGAAGTGGAGGCTGTAAAAATCAGATAA 1559
| ||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 1918 AATGCGTGGCTTGTCTATGAAGTGGAGGCAGTAAAAGTTAGATAA 1962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65781853115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5