BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12350.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928959 jgi|Araly1|928959|scaffold_301416.1 1982 0.0
> Ahg928959 jgi|Araly1|928959|scaffold_301416.1
Length=1310
Score = 1982 bits (1073), Expect = 0.0
Identities = 1221/1294 (94%), Gaps = 3/1294 (0%)
Strand=Plus/Plus
Query 42 AGAAGTTTCATCTGAGAAAAGATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAG 101
|||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGAAATTTCGTCTGAGAAAA-ATGGCTACATTTGCACTTCCCTTCTGCGAAATTCCCGAA 59
Query 102 GATCTCCAGCTCCGAATCTTATCCCTCCTCACACCAGCGGAGATCTCCAGCTTCGCCTGC 161
|||||||||||||| ||||| || ||||| | ||||| |||||||||||||||||||||
Sbjct 60 GATCTCCAGCTCCGCATCTTGTCATTCCTCTCCCCAGCAGAGATCTCCAGCTTCGCCTGC 119
Query 162 ACATCGAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGC 221
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ACATCTAAACGCTTCGCCTCGCTATGTCAAGAAGACGGCAAAATCTGGCACGTTATGTGC 179
Query 222 GATCAGAGATGGGGGAAGAAAACTAAGATCCAGAAATGGGCAAACGGTCAAATCCCTTAT 281
|||||| ||||||| |||||||| |||||||||||||||| ||| |||||||||||||||
Sbjct 180 GATCAGCGATGGGGCAAGAAAACGAAGATCCAGAAATGGGGAAATGGTCAAATCCCTTAT 239
Query 282 AGACACCTTTACAAGACTCTAAAGGGATTGGAGAATCTAATTGGCTTCTGGCGTCTCTGC 341
|||| ||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 240 AGACTCCTTTACAAGACTCTAAAGGGATTGGAAAATCTTATTGGATTCTGGCGTCTCTGC 299
Query 342 GGCAGAGCAAATCCCGCCGCTTCATCGCCGCCGCTTGTTTTCTTCGATTGGGGTTCTTCT 401
||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 300 GGCAGAGCAAATCCCGCAGCTTCATCGCCACCGCTTGTTTTTTTCGATTGGGGGCCTTCT 359
Query 402 TTTATATTGGGATCTAGAGTTTTATCCACCGGAGATGATACTTATGAGGTAAAGAAGACA 461
||| |||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||
Sbjct 360 TTTGTATTGGGATCTAGAGTTTTATCTACCGGAGATGAAACTTATCAGGTAAAAAAGACA 419
Query 462 CCTTTTCTCTTAATGGGGATTTCGCCGGAGGGACGATCTGAGAATTTCTTGGATCTCGTC 521
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 420 CCTTTTCTCTTATTGGGGATTTCGTCGGAGGGACGAACTGAGAATTTCTTGGATCTCGTC 479
Query 522 GGTGGTAATCTCAGATCTGTGGATGATGATTTGAAAGAATTAGAAGCTTCTAACAATCTC 581
|| ||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 480 GGAGGTTATCTCAGATCTGTGGATGATGATCTGAAAGAATTAGAAGCTTCTGACAATCTC 539
Query 582 GTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGT 641
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GTCTCGGTGGATGTGAATTTCATGGGGAATGGTCATATCATGGTGGAGGAGAATCGATGC 599
Query 642 TTTACCAACAACAATCGTAGAGAAGACCAGAGGAGCTCAGGGGATGAGAGTGATGATTTG 701
|||| |||||||| || ||||||||| |||| |||||||||||| |||||||||||||||
Sbjct 600 TTTATCAACAACAGTCTTAGAGAAGAGCAGAAGAGCTCAGGGGACGAGAGTGATGATTTG 659
Query 702 ATCTCATCGCCCAATTTTTCGGAAATGTACACTCAATTGGCGAATAAGACGAGTCCAGGC 761
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 660 ATCTCATCGCCCAATTTTTCGGAAATGTACACTCAACTGGCGAATAAGACGAGTCCAGGC 719
Query 762 GGTGACAGGAGGAGACAGAAGAGGAAGGAGAAGGAGAGGCAAGCGTCGAGGACTAAGTGG 821
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 720 GGTGACAGGAGGAGACAGAGGAGGAAGGAGAAGGAGAGGCAAGCGTCGAGGACTAAGTGG 779
Query 822 GAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAGACCCTTACAA 881
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 780 GAACCAGAACACTTTCTCAAAGTTGCTGATTGCTCCCCCACGCCTACTAAACCATTACAA 839
Query 882 GGCTTATGGAAGGGTTTCTGTGAGGGAAGCATCGAGTTGTATTTGGTCAAATATGATGAA 941
|| ||||||||||||||||||||||||||||| ||||| ||| |||||||||| ||||||
Sbjct 840 GGTTTATGGAAGGGTTTCTGTGAGGGAAGCATGGAGTTATATCTGGTCAAATACGATGAA 899
Query 942 GTTGGAGGCATTATATGCAGAAAAGTAGAGGACTTGTCCCTCTCACGGTACACTCCTCCT 1001
|||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 900 GTTGGAGGCATTGTATGCAGAAAAGTAGAGGACTTGTCTCTCTCACGGCACACTCCTCCT 959
Query 1002 GTGTTCTGGACACCCAAACATACGTTCATCAGATCTCCTTTTTCAGCTGAAGAAGAGCTG 1061
||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||
Sbjct 960 GTGTTCTGGACACCCAAACATGCGTTTATCAGATCTCCCTTTTCAGCTGAAGAAGAGCTG 1019
Query 1062 CTACTGAATAGTCGAATCCATATTAGCCCTTTCGCTGAAGTTCATGAAAATGTTGTATCT 1121
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1020 CTACTGAATAGTCGAATCCATATTAGCCCTCTCGCCGAAGTTCATGAAAATGTTGTATCT 1079
Query 1122 GGAATGTTGTACATGAAGTCTAGCTGCGATCTGGTGTTGCCAGGAGAACCTGGC-AATGG 1180
||||||||||||||||||||||| | |||||||||||||||||||||| | ||| |||||
Sbjct 1080 GGAATGTTGTACATGAAGTCTAGTTACGATCTGGTGTTGCCAGGAGAAGC-GGCCAATGG 1138
Query 1181 CATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGACAATGGGACTTTCGGTTT 1240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1139 CATTGGTTTTCTTAGAGGTGAAGGGCGGGTCTGGTTGTATGAAAATGGGACTTTCGGTTT 1198
Query 1241 CGGGTTTCTTCGAGATCAATTTATCATTGATCTGAAACGTGTTGCTCTGGAAGATGGGTG 1300
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||
Sbjct 1199 CGGGTTTCTTCGAGATCAATTTGTCATTGATCTGAAACGTGTTGCCCTGGAAGATGGTTG 1258
Query 1301 TCTAGCTGACGAGGTAGAAGCTTGTATGTGATTT 1334
||||||||||||||||||||| | ||||||||||
Sbjct 1259 TCTAGCTGACGAGGTAGAAGCGTCTATGTGATTT 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5