BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12370.1
Length=905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928961 jgi|Araly1|928961|scaffold_301418.1 828 0.0
> Ahg928961 jgi|Araly1|928961|scaffold_301418.1
Length=553
Score = 828 bits (448), Expect = 0.0
Identities = 519/553 (94%), Gaps = 5/553 (1%)
Strand=Plus/Plus
Query 97 TTAGCCTCTGTATAGATCGATGGCTAGCCTGAGAAGAGCTCTGCTCGTAGCAGGGAAGAC 156
||||||||||| |||||||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 2 TTAGCCTCTGTGTAGATCGATGTCTAGCCTCAGAAGAGCTCTGCTCGTCGCAGGGAAGAC 61
Query 157 GAAGATCAACCTAGAAAACTGCCATTTCATCACCGGAATCAACTACAACGGTCTCAGCGT 216
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GAAGATCAACCTAGAGAACTGCCATTTCATCACCGGAATCAACTACAACGGTCTCAGCGT 121
Query 217 GAAGCAACTACAAGAGCTCCGTGGAATCCTCCGTGAAAACACAAACACGAAGCTCCTCGT 276
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 122 GAAGCAATTACAAGAGCTCCGTGGAATCCTCCGTGAGAACACAAACACGAAGCTCCTCGT 181
Query 277 CGCCAAGAACACTTTAGTCTACAAAGCCTTGGAAGGAACCAAATGGGAGTCTCTGAAGCC 336
||||||||||||| | || | ||||||||| ||||||||||||||||| |||||||||||
Sbjct 182 CGCCAAGAACACTCTGGTGTTCAAAGCCTTAGAAGGAACCAAATGGGAATCTCTGAAGCC 241
Query 337 ATGTATGAAGGGTATGAACGCTTGGCTATTCGTTCAATCTGAAGATATACCTGCTGCTTT 396
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 242 ATGTATGAAGGGTATGAACGCTTGGCTCTTCGTTCAATCTGAAGATATACCTGCTGCTTT 301
Query 397 GAAGACTTTCATCAATTTTCAGAAAGAGAAGAAGCTCTACGATAACAATTTAGGCGGTGC 456
|||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||||
Sbjct 302 GAAGACTTTCATCAGTTTCCAGAAAGAGAAGAAGCTCTACGACAATAATTTAGGCGGTGC 361
Query 457 TGTTTTTGAGGAGAAATTGTATGCTCCTCAGGATTACAAGGTTATTGAGACGATGCCTTC 516
||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 362 TGTCTTTGAGGAGAAATTGTACGCTCCTCAAGATTACAAGGTTATTGAGACGATGCCATC 421
Query 517 TCGCGCTGATGTTTATGGTATGATGCTTGGTTCTTTGCATTGGCCGGCGTTAGATCTCGT 576
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TCGTTCCGATGTTTATGGTATGATGCTTGGTTCTTTGCATTGGCCGGCGTTAGATCTCGT 481
Query 577 CAATGCGTTGCAGGCCCCACCGGCGGCGTCGGAAAATGAGACAGTTGTTGCATAGAAGGA 636
|||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 482 TAATGCGTTGCAGGCACCAACGGCG---TCGGAAAATGAGACTGTTGTTGCATAGAAGGA 538
Query 637 A-GGAATTTTCCA 648
| ||| |||||||
Sbjct 539 ATGGA-TTTTCCA 550
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33548166960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5