BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12380.2
Length=2313
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928962 jgi|Araly1|928962|scaffold_301419.1 3537 0.0
> Ahg928962 jgi|Araly1|928962|scaffold_301419.1
Length=2216
Score = 3537 bits (1915), Expect = 0.0
Identities = 2134/2237 (95%), Gaps = 26/2237 (1%)
Strand=Plus/Plus
Query 70 CAGT-AGGAAGAGAAAGCCATGGCGTTCGTTTCGAGGATACGTAGGCAGAGTGATTACAA 128
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3 CAGTAAGGAAGAGAAAGCCATGGCGTTCGTTTCGAGGATACGTAGGCAGACTGATTACAA 62
Query 129 TACATATCCATCTTCGATTCCCATTGTTATCGATAATGGCGCTTCCTACTTCCGTATCGG 188
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TACCTATCCATCTTCGATTCCCATTGTTATCGATAATGGCGCTTCCTACTTCCGTATCGG 122
Query 189 GTGGGCAGGAGAAACTGAGCCTCGTGTTGTTTTCCGCAATATCGTGCAAAGACCACGCCA 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 123 GTGGGCAGGAGAAACTGAGCCTCGTGTTGTTTTCCGCAATATCGTGCAAAGACCTCGCCA 182
Query 249 CAAAGCTACAGTTCTTCTCTCTAGTACAGGTGAAACTGTTACTATTGTTGGCGACCTGGA 308
| | | || | |||||||||||| ||||||||||||||||||| |||
Sbjct 183 C--A---A-AG---------C---TACAGGTGAAACAGTTACTATTGTTGGCGACCAGGA 224
Query 309 TCCTTCCATGATGAAGTACTTTGATTGCACTCGCTCTGGACCACGTTCCCCTTTTGACAG 368
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 225 TCCTGCCATGATGAAGTACTTTGATTGCACTCGCTCTGGACCACGTTCGCCTTTTGACAG 284
Query 369 CAATGTGGTTTATCAGTTTGAGATCATGGAATATATTCTTGACTACGCCTTTGATCGTTT 428
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 285 CAATGTGGTTTATCAGTTTGAGATCATGGAATATATTCTTGACTTCGCCTTTGATCGTTT 344
Query 429 GGGTGCTAATGGATCAGGGATTGATCATCCAATCCTAATCACTGAATGTGCATGCAACCC 488
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 345 GGGTGCTAACGGATCAGGGATTGATCATCCAATCCTAATCACTGAATGTGCATGCAATCC 404
Query 489 AGTTCAATCTCGTAGCAAAATGGCAGAACTGCTATTTGAGACTTATGGAGTGCCTGCAGT 548
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AGTTCAATCTCGAAGCAAAATGGCAGAACTGCTATTTGAGACTTATGGAGTGCCTGCAGT 464
Query 549 TGCATTTGGAGTCGATGCTGCTTTCAGCTACAAATACAATCAACTACATGGAATTTGTAA 608
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 465 TGCATTTGGAGTTGATGCTGCTTTCAGCTACAAGTACAATCAACTACATGGAATTTGTAA 524
Query 609 AAAAGATGGAATTGTTCTCTGTCCTGGATTCACGACAACACACTCCATTCCGTTTGTCGA 668
|||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 525 AAAAGATGGAATCGTTCTCTGTCCTGGATTCACTACAACACACGCCATTCCGTTTGTCGA 584
Query 669 CGGAGAACCTATATATAAAGGATCCAGCCGAACTAACATTGGTGGATATCATGTCACTGA 728
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 585 CGGAGAACCTATTTATAAAGGATCCTGCCGAACTAACATTGGTGGATATCATGTCACTGA 644
Query 729 TTATTTAAAGCAGCTTCTGTCACTTAAGTACCCTTTTCATTCGTCTAGGTTTACATGGGA 788
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTATTTGAAGCAGCTTCTGTCACTTAAGTACCCTTTTCATTCGTCTAGGTTTACATGGGA 704
Query 789 GAAGGCCGAAGATTTGAAATTGGAACACTGTTATATCGCACCTGACTATGCTTCGGAAAT 848
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 705 GAAGGCCGAAGATTTGAAATTGGAACACTGTTATATCGCACCTGACTATGCTTCTGAAAT 764
Query 849 TCGGTTATTCCAGGAAGGAAGAAAAGAAGCTGAAGAGAAAACAAGTTATTGGCAGCTTCC 908
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 765 TCGGTTATTCCAGGAAGGAACAAAAGAAGCTGAAGAGAAAACAAGGTATTGGCAGCTTCC 824
Query 909 ATGGATACCTCCTCCCACCGAAGTTCCTCCATCAGAAGAAGAGATTGCAAGGAAGGCAGC 968
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 825 ATGGATACCTCCTCCCACGGAAGTTCCCCCATCAGAAGAAGAGATTGCAAGGAAGGCAGC 884
Query 969 TATAAGAGAAAAACAAGGTCAAAGGCTGCGAGAAATGGCTGAAGCAAAGAGAGTGTCCAA 1028
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 885 TATAAGAGAAAAACAAGGTCAAAGGCTGAGAGAAATGGCTGAAGCAAAGAGATTGTCCAA 944
Query 1029 GATTAATGACATGGAGAATCAACTGATTAGCTTGCGTTTCCTTTTGAAGCAAGTTGACCA 1088
||| ||||| ||||| |||||| ||| |||||||| ||||||| ||||||||||||||||
Sbjct 945 GATAAATGAAATGGATAATCAATTGACTAGCTTGCATTTCCTTCTGAAGCAAGTTGACCA 1004
Query 1089 GGTTGAAGAGGATGATATTCCAACCTTTTTGTCAGACACCGGTTACGCGTCCAGGCAAGA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 GGTTGAAGAGGATGATATTCCAACCTTTTTGTCAGACACCGGTTACGCGTCCAGGCAAGA 1064
Query 1149 GCTAGAGTCTACTATTACGAAAGTGACACAGTCGCTTAGAAAAGCAAGGGGTGAGCCGAA 1208
|||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1065 GCTAGAATCTACTATTACGAAAGTGACACAATCGCTTAGAAAAGCAAGGGGCGAGCCGAA 1124
Query 1209 GAATGAACCAGCTGAGTA-TGAAGAAAACCCTGATTCTCTTAATAATGAAAAGTATCCAC 1267
||||||||||||||| || |||||| ||| |||||||||||||||||||||||||||| |
Sbjct 1125 GAATGAACCAGCTGA-TAGTGAAGAGAACACTGATTCTCTTAATAATGAAAAGTATCCTC 1183
Query 1268 TTATGAATGTCCCCGATGATATTCTTACTCCTGAGCAGCTTAAGGACAAGAAGAGGCAAA 1327
||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1184 TTATGAATGTCCCTGATGATATACTTACTCCTGAGCAGCTTAAGGACAAGAGGAGGCAAA 1243
Query 1328 TGTTTCTTAAAACAACAGCAGAGGGCCGGCTACGAGCTAGACAAAAGCGTAATGAGGAGG 1387
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1244 TGTTTCTTAAAACAACAGCAGAGGGTCGGCTACGAGCTAGACAAAAGCGTAATGAGGAGG 1303
Query 1388 AACTCGAAAAAGAGAAAAGAAATCAATTAGAGGAGGAAAGACGTCGTGAGAACCCAGAGT 1447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1304 AACTCGAAAAAGAGAAAAGAAATCAATTAGAGGAGGAAAGACGTCGTGAGAACCCAGAGT 1363
Query 1448 CTTACTTAGAGGAGTTGCAAGCTCAGTACAAGGAAGTGTTGGAGAGAGTTGAGCAGAAGA 1507
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CTTACTTAGAGGAGATGCAATCTCAGTACAAGGAAGTGTTGGAGAGAGTTGAGCAGAAGA 1423
Query 1508 AGCGTCTGAAAACAAACGGGTCCAGTAACGGGAATAACAAGTCTGGAGGTATTGGGCGAG 1567
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1424 AACGTCTGAAAACAAACGGGTCCAGTAACGGGAATAACAAGTCTGGAGGTGTTGGGCGAG 1483
Query 1568 GCGAGCGACTCAGTGCTGCACAGAGGGAGAGAATGCGTCTGCTGACGACAGCAGCCTTTG 1627
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GCGAGCGACTAAGCGCTGCACAGAGGGAGAGAATGCGTCTGCTGACGACAGCAGCCTTTG 1543
Query 1628 ATAGAGGGAAAGGCGAGGATACGTTTGGTTCTAGAGATGAAGATTGGCAGCTCTACAAAC 1687
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1544 ATAGAGGGAAAGGCGAGGATACGTTTGGTACTAGAGATGAAGATTGGCAGCTCTACAAAC 1603
Query 1688 TTATGAGCAAGGATAATGACGATGATGACGAACAACCTGATTCAGACGAGGCAGAGTTGG 1747
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1604 TTATGAGCAAAGATAATGACGACGATGACGAACAACCTGATTCAGACGAGGCTGAGTTGG 1663
Query 1748 CTCGTTTATCATCTAGACTTCAGGAAATTGATCCAACATTTGTGCAGAAAGTAGAAGGAG 1807
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1664 CTCGTTTATCATCTAGACTTCAGGAAATAGACCCAACATTTGTGCAGAAAGTAGAAGGAG 1723
Query 1808 AATTGAGTCAGACATCAGGGGAGGTGCCACGCGTACGCCCATTAACAGAGGAAGACTACA 1867
||| ||||||||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1724 AATCGAGTCAGACTTCAGGGGAGGTGCCACGCGTACGTCCGTTAACAGAGGAAGACTACA 1783
Query 1868 AGATAGTGATTGGTATAGAAAGATTCCGTTGCCCAGAGATCCTGTTCCATCCAAACCTTA 1927
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1784 AGATAGTGATTGGTATTGAAAGATTCCGTTGCCCTGAGATCCTGTTCCATCCAAACCTTA 1843
Query 1928 TTGGTATTGACCAAGTAGGCTTAGACGAGATGGCTGGCACATCAATCAGAAGGCTACCGC 1987
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1844 TTGGCATTGACCAAGTAGGCTTAGACGAGATGGCCGGTACATCAATCAGAAGGCTACCGC 1903
Query 1988 ACGACGAGAAAGAGTTAGAGGAGAGGCTAACGAGCTCGATACTAATGACGGGCGGGTGTA 2047
| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1904 AGGACGAGAAAGAGATAGAGGAGAGGCTAACGAGCTCGATACTGATGACGGGCGGGTGTA 1963
Query 2048 GCCTTCTTCCAGGGATGAACGAGCGGTTGGAATGTGGGATTAGGATGATAAGACCTTGCG 2107
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1964 GCCTTCTTCCAGGGATGAAAGAGCGGTTGGAATGTGGGATTAGGATGATAAGACCGTGCG 2023
Query 2108 GATCACCCATTA-ACGTGGTTAGAGCTATGGATCCAGTGCTGGATGCATGGCGAGGAGCA 2166
|||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 2024 GATCACCCAT-AGACGTGGTTCGAGCTATGGATCCAGTGCTGGATGCATGGCGTGGAGCA 2082
Query 2167 TCTGCATTTGCTGCTAATTTGAACTTCTTGGGGAATGCCTTTACTAAGATGGATTACGAC 2226
||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||| ||
Sbjct 2083 TCTGCGTTTGCTGCTAATTTGAACTTCTTGGGGAATGCTTTTACTAAGACGGATTACTAC 2142
Query 2227 GAGAAAGGTGAAGATTGGCTTAGAAATTATCAAATTCGATACAACTATTTGTGATTCCTC 2286
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 2143 GAGAAAGGTGAAGATTGGCTTAGAAAATATCAAATTCGATACAATTATTTGTGATTCCT- 2201
Query 2287 CAGTTGCTATTAATTGT 2303
| ||||||||||||||
Sbjct 2202 -A-TTGCTATTAATTGT 2216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87112390315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5