BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12390.1
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904129 jgi|Araly1|904129|Al_scaffold_0003_1257 749 0.0
Ahg940852 jgi|Araly1|940852|scaffold_601396.1 614 4e-175
> Ahg904129 jgi|Araly1|904129|Al_scaffold_0003_1257
Length=528
Score = 749 bits (405), Expect = 0.0
Identities = 439/456 (96%), Gaps = 0/456 (0%)
Strand=Plus/Plus
Query 244 GCAGGAGGTAAGTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAG 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 GCAGGAGGTAAGTCAAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAG 132
Query 304 CTTGGCATGAAACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATC 363
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 CTCGGGATGAAACCCATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATC 192
Query 364 TTGTTTGTCATATCAAAGCCTGATGTGTTCAAGAGTCCAGCATCAGACACATATGTGATC 423
||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||
Sbjct 193 TTGTTTGTCATATCAAAACCTGATGTGTTCAAGAGCCCGGCATCAGACACATATGTGATC 252
Query 424 TTTGGAGAGGCGAAGATCGAGGATTTGAGCTCTCAGATCCAGTCGCAAGCAGCAGAGCAA 483
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 253 TTTGGAGAGGCCAAGATCGAGGATTTGAGCTCTCAGATCCAGTCACAGGCAGCAGAGCAA 312
Query 484 TTCAAGGCACCAGATCTCAGCAATGTGATCTCAAAGGGTGAGTCATCGAGCGCTGCAGTG 543
|||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 313 TTCAAGGCTCCAGATCTCAGCAATGTGATCTCAAAGGGTGAGTCCTCGAGCACTGCAGTT 372
Query 544 GTTCAGGATGATGAGGAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGAGTTGGTG 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 GTTCAGGATGATGAGGAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGAGTTGGTG 432
Query 604 ATGACTCAAGCAGGAGTGTCTAGGCCAAATGCTGTGAAGGCTCTCAAGGCTGCAGATGGA 663
|||||||||||||||||||| ||||| | || |||||||||||||||||||||||||||
Sbjct 433 ATGACTCAAGCAGGAGTGTCGAGGCCTAGGGCAGTGAAGGCTCTCAAGGCTGCAGATGGA 492
Query 664 GATATTGTCTCTGCCATCATGGAGCTTACCACCTAA 699
||||||||||||||||||||||||||||||||||||
Sbjct 493 GATATTGTCTCTGCCATCATGGAGCTTACCACCTAA 528
Score = 124 bits (67), Expect = 9e-28
Identities = 71/73 (97%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 88 ATGACTACCGAAGAGAAAGAGATCCTCGCCGCCAAATTGGAAGAACAGAAGATCGATCTC 147
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGACTACCGAAGAGAAAGAGATCCTCGCCGCCAAATTGGAAGAACAAAAGATCGATCTC 60
Query 148 GATAAGCCCGAAG 160
||||| |||||||
Sbjct 61 GATAAACCCGAAG 73
> Ahg940852 jgi|Araly1|940852|scaffold_601396.1
Length=656
Score = 614 bits (332), Expect = 4e-175
Identities = 556/659 (84%), Gaps = 35/659 (5%)
Strand=Plus/Plus
Query 80 CTCTC-ATTATGACTACCGAAGAGAAAGA-GATCCTCGCCGCCAAATTGGAAGAACAGAA 137
||||| | ||||||| ||||| ||||||| || ||||||||||||||||||||||||||
Sbjct 12 CTCTCAAATATGACTGCCGAACAGAAAGAGGA-GCTCGCCGCCAAATTGGAAGAACAGAA 70
Query 138 GATCGATCTCGATAAGCCCGAAGTtgaggacgatgatgataacgaagacgatgactctga 197
||||||||| |||||||| || ||||| ||||||||||| || || || ||||| || ||
Sbjct 71 GATCGATCTTGATAAGCCTGAGGTTGAAGACGATGATGACAATGATGAGGATGATTCGGA 130
Query 198 tgacgatgataaggatgatgacgaggctgatgGACTAGATGGAGAGGCAGGAGGTAAGTC 257
|||||||| ||| | || |||| || | | ||||||||||| || || |||
Sbjct 131 CGACGATGACGAGG-CG--GAGGAGG--GA--CA-T-GATGGAGAGGCCGGCGGCCGGTC 181
Query 258 AAAACAAAGCAGAAGTGAGAAGAAGAGTCGCAAAGCCATGCTCAAGCTTGGCATGAAACC 317
||| ||||||||||||||||| |||||||| ||||| ||| | |||||||| ||||||||
Sbjct 182 AAAGCAAAGCAGAAGTGAGAAAAAGAGTCGTAAAGCAATGTTGAAGCTTGGGATGAAACC 241
Query 318 CATCACTGGTGTTAGCCGAGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTCATATC 377
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 242 CATCACTGGTGTTAGCCGTGTCACCGTCAAAAAGAGCAAGAATATCTTGTTTGTGATATC 301
Query 378 AAAGCCTGATGTGTTCAAGAGTCCAGCATCAGACACATATGTGATCTTTGGAGAGGCGAA 437
||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 302 AAAACCTGATGTGTTCAAGAGTCCAGCATCAGATACATATGTGATCTTTGGTGAGGCCAA 361
Query 438 GATCGAGGATTTGAGCTCTCAGATCCAGTCG-CAAGCAGCAGAGCAATTCAAGGCACC-A 495
||| |||||||||||||| ||| | ||| | ||||| |||||||| |||||||| || |
Sbjct 362 GATAGAGGATTTGAGCTCGCAGCTGCAGA-GTCAAGCCGCAGAGCAGTTCAAGGCTCCCA 420
Query 496 GATCTCAGCAATGTGATCTCAAAGGGTGAGTCATCGAG-----C-GCTGCAG-TG--GTT 546
| |||||||||||||| ||| |||| || ||||||| | ||||||| || |||
Sbjct 421 -ACCTCAGCAATGTGATATCACAGGGAGAAACATCGAGTGGTGCAGCTGCAGCTGCTGTT 479
Query 547 CAGGATGATGA-G--GAGGTTGACGAGGAAGGTGTTGAGCCAAAGGACATTGAGTTGGTG 603
||||||||||| | ||||| |||||||| || || |||||||||||||| ||| |||||
Sbjct 480 CAGGATGATGATGAAGAGGTGGACGAGGAGGGAGTAGAGCCAAAGGACATCGAGCTGGTG 539
Query 604 ATGACTCAAGCAGGAGTGTCTAGGCCAAATGCTGTGAAGGCTCTCAAGGCTGC-AGATGG 662
||||| |||||||||||||||| ||||| || || ||||| |||||||| || | ||||
Sbjct 540 ATGACCCAAGCAGGAGTGTCTAAGCCAAGGGCAGTTAAGGCCCTCAAGGCCGCTA-ATGG 598
Query 663 AGATATTGTCTCTGCCATCATGGAGCTTACCACCTAAACC--AAA-GTCTTTTCTACTT 718
|||||| ||||||||||||||||||||||||||||||| | ||| || ||| ||||||
Sbjct 599 AGATATAGTCTCTGCCATCATGGAGCTTACCACCTAAATCTGAAACGT-TTT-CTACTT 655
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33853150296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5