BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12400.1
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928964 jgi|Araly1|928964|scaffold_301421.1 1929 0.0
Ahg488210 jgi|Araly1|488210|fgenesh2_kg.6__1344__AT5G13860.1 425 4e-118
> Ahg928964 jgi|Araly1|928964|scaffold_301421.1
Length=1243
Score = 1929 bits (1044), Expect = 0.0
Identities = 1178/1243 (95%), Gaps = 7/1243 (1%)
Strand=Plus/Plus
Query 28 CTTCCAACGCCGACACCGTTTAACTCCGATGGTTCCCCCGCCGTCTAATCCGCAGCAGGT 87
|||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||| |
Sbjct 1 CTTCCACCGCCGACACCGTTTTACTCCGATGGTTCCTCCGCCGTCGAATCCGCAGCAGAT 60
Query 88 TCAGCAGTTCCTCTCCTCTGCCCTCTCCCAGCGCGGCCCATCTTCAGTCCCCTACGAAGA 147
||||||||||||||| || || |||||||||||||| ||||||||||| |||||||||||
Sbjct 61 TCAGCAGTTCCTCTCTTCCGCGCTCTCCCAGCGCGGTCCATCTTCAGTTCCCTACGAAGA 120
Query 148 GTCCAACAAGTGGTTGATCCGGCAACATCTACTTAACCTAATCTCTTCTTACCCTTCCTT 207
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GTCCAACAAGTGGTTGATCCGGCAACATCTACTTAACCTAATCTCCTCTTACCCTTCCTT 180
Query 208 AGAGCCCAAAACGGCATCGTTTATGCACAACGATGGTCGCTCCGTCAACCTCCTTCAAGC 267
|||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 181 AGAGCCCAAAACGGCATCGTTTATGCACAACGATGGCCGGTCCGTCAATCTCCTTCAAGC 240
Query 268 AGATGGTACGATTCCGATGCCTTTTCATGGAGTCACCTATAACATACCTGTGATTATCTG 327
|||||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||||
Sbjct 241 AGATGGTACGATCCCGATGCCTTTCCATGGAGTCACCTATAACATCCCTGTAATCATCTG 300
Query 328 GCTCCTCGAGTCATATCCTCGTCATCCTCCTTGCGTCTATGTGAATCCCACCGCTGATAT 387
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTCCTCGAATCTTATCCTCGTCATCCTCCTTGCGTCTATGTGAATCCCACCGCTGATAT 360
Query 388 GATCATCAAGCGACCTCACGCACATGTCACTCCTTCTGGTCTCGTTTCTCTTCCGTACCT 447
|||||| |||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 361 GATCATAAAGCGACCTCACGCACATGTTACTCCTTCTGGTCTCGTTTCTCTTCCTTATCT 420
Query 448 TCAGAATTGGGTCTACCCTAGCTCCAATCTCGTAGATCTCGTCTCCGATCTCAGCGCTGC 507
|||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 421 TCAGAATTGGGTTTTCCCTAGCTCAAATCTCGTAGATCTCGTCTCCGATCTCAGCGCTGC 480
Query 508 TTTTGCTCGTGATCCGCCTCTTTATTCTCGACGCCGTCCTCAGCCACCGCCACCGTCTCC 567
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 481 TTTTGCTCGTGATCCGCCTCTTTATTCACGACGCCGTCCTCAGCCGCCTCCACCGTCTCC 540
Query 568 TCCTAC-GGTATACGATTCGTCTCTGTCACGACCTCCTTCGGCTGATCAGTCATT-GCCT 625
|||||| || |||||||||||||||| ||||||||||||| |||||||||||||| | ||
Sbjct 541 TCCTACTGG-ATACGATTCGTCTCTGACACGACCTCCTTCTGCTGATCAGTCATTAG-CT 598
Query 626 AGACCGTTCCCGCCATCACCTTACGGCGGAGGAGTAAGTAGGGTGCAAGTGCAGCATGTT 685
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 599 AGACCGTTCCCGCCATCACCTTACGGTGGAGGAG---GTAGGGTGCAAGTGCAGCATGTT 655
Query 686 CACCACCAGCAGCAATCTGATGATGCGGCGGAGGTTTTCAAGAGAAATGCGATTAATAAG 745
||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 656 CACCACCAGCAGCAATCGGATGATGCTGCGGAGGTTTTCAAGAGAAACGCGATCAATAAG 715
Query 746 ATGGTGGAGATGGTTCATAGCGATTTGGTTTCGATGAGgagagccagagaagctgaagca 805
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 716 ATGGTGGAGATGGTTCACGGCGATTTGGTTTCGATGAGGAGAGCCAGAGAAGCTGAAGCA 775
Query 806 gaggagctgctgagcttgcaagctgggctgaagagaagagagGATGAGCTTAATATAGGG 865
|||||||| ||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 776 GAGGAGCTACTGAGTTTGCAAGCTGGGCTGAAGAGAAGAGAGGAAGAGATTAATATAGGT 835
Query 866 TTGAAAGAGATGGTTGAGGAGAAAGAAACACTTGAACAACAATTACAGATTATCTCCATG 925
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 836 TTGAGAGAGATGGTTGAGGAGAAAGAAACACTTGAACAACAATTACAGGTTATCTCCATG 895
Query 926 AACACTGATATTCTAGACTCGTGGGTTAGAGAGAACCAAGGCAAAACCAAGAATTTAGTT 985
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 896 AACACTGATATTCTAGATTCTTGGGTTAGAGAGAACCAAGGCAAAACCAAGAATTTAGTT 955
Query 986 GATTTGGATGTGGATAATGCTTTTGAATGTGGTGACACACTCTCTAAGCAGATGTTAGAG 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GATTTGGATGTGGATAATGCTTTTGAATGTGGTGACACACTCTCTAAGCAGATGTTAGAG 1015
Query 1046 TGTACTGCTTTGGATTTAGCCATTGAAGATGCTATTTATTCCTTGGATAAGTCGTTTCAA 1105
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TGTACTGCTTCGGATTTAGCCATTGAAGATGCTATTTATTCCTTGGATAAGTCGTTTCAA 1075
Query 1106 GATGGTGTTGTTCCCTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGAGAACAG 1165
|| || |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1076 GACGGAGTTGTTCCCTTTGATCAGTACTTGAGGAATGTAAGGTTGTTGTCGAGAGAACAG 1135
Query 1166 TTCTTCCACCGAGCCACGGGTTCTAAAGTCAGGGCGGCACAAATGGAGGTTCAGGTTGCA 1225
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1136 TTCTTCCACCGAGCCACGGGTTCTAAAGTCAGAGCGGCACAGATGGAGGTTCAGGTTGCA 1195
Query 1226 GCCATCGCAGGTAGGTTACATTCATGAATGAAATTCAGTGTTT 1268
|| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1196 GCGATCGCAGGTAGGTTACATTCGTGAATGAAATTCAGTGTTT 1238
> Ahg488210 jgi|Araly1|488210|fgenesh2_kg.6__1344__AT5G13860.1
Length=1252
Score = 425 bits (230), Expect = 4e-118
Identities = 458/565 (81%), Gaps = 27/565 (5%)
Strand=Plus/Plus
Query 704 GATGATGCGGCGGAGGTTT-TCAAG-AGAAATGCGATTAATAAGATGGTGGAGATGGTTC 761
||||||||||||||||||| | ||| || || ||||| || ||||| |||||||||||||
Sbjct 604 GATGATGCGGCGGAGGTTTAT-AAGAAG-AACGCGATCAACAAGATTGTGGAGATGGTTC 661
Query 762 ATAGCGAT-TTGGT-TTCGATGAGgagagccagagaagctgaag-cag-aggagctgctg 817
|| | ||| || || || ||||||||| || ||||||| || || | | |||| | |||
Sbjct 662 ATGGTGATCTT-GTATT-GATGAGGAGTGCTAGAGAAG-TGGAGACGGAAGGA-TTACTG 717
Query 818 agcttgcaagctgggctgaagagaagagagGATGAGCTTAATATAGGGTTGAAA-GAGAT 876
|| || ||| |||| || ||||||||||| || ||| | || | | |||| ||| |||||
Sbjct 718 AGTTTACAATCTGGACTTAAGAGAAGAGAAGAGGAGATCAACA-ATGGTTTAAAGGAGAT 776
Query 877 GGTTG-AGGAGAAAGAAACACTT-GAACAACAATTACAGATTATCT-CCATGAACACTGA 933
|| || | |||||||| || ||| || || ||||||||| |||| | | ||||| |||||
Sbjct 777 GG-TGAATGAGAAAGAGAC-CTTAGAGCAGCAATTACAGGTTAT-TGCTATGAATACTGA 833
Query 934 TATTCTAGACTCGTGGGTTAGAGAGAACCAAGGCAAAACCAAGAA-TT--TAGTTGATTT 990
| |||| | || ||| |||| ||||| ||||| ||| | ||||| || |||| |||||
Sbjct 834 TGTTCTTGGTTCTTGGATTAGGGAGAATCAAGGGAAAGCTAAGAATTTGCTAGTAGATTT 893
Query 991 GGATGTGGATAATGCTTTTGAATGTGGTGACACACTCTCTAAGCAGATGTTAGAGTGTAC 1050
|||||| ||| |||| |||||||| |||| ||| | || || |||||||||||||||||
Sbjct 894 GGATGTTGATGATGCATTTGAATGCAGTGAGACATTGTCCAAACAGATGTTAGAGTGTAC 953
Query 1051 TGCTTTGGATTTAGCCATTGAAGATGCTATTTATTCCTTGGATAAGTCGTTTCAAGATGG 1110
||| ||||||||||||||||||||| | |||||||| ||||||| ||||||| ||||||
Sbjct 954 TGCACTGGATTTAGCCATTGAAGATGTTGTTTATTCCATGGATAAATCGTTTCGAGATGG 1013
Query 1111 -T-GTTGTTCCCTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGAGAACAGTTC 1168
| |||| | | |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1014 TTCGTTG-T-CGTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGGGAGCAGTTC 1071
Query 1169 TTCCACCGAGCCACGGGTTCTAAAGTCAGGGCGGCACAAATGGAGGTTCAGGTTGCAGCC 1228
|||||||||||||||| | ||||| |||| | ||| ||||| | ||||||||| ||
Sbjct 1072 TTCCACCGAGCCACGGCTGAGAAAGTTAGGGAGATACAGATGGATGCTCAGGTTGCTTCC 1131
Query 1229 ATCGCAGGTAGGTTACATTCATGAA 1253
|| |||| |||||| ||||| ||||
Sbjct 1132 ATTGCAGCTAGGTTGCATTCGTGAA 1156
Score = 396 bits (214), Expect = 3e-109
Identities = 396/482 (82%), Gaps = 19/482 (4%)
Strand=Plus/Plus
Query 95 TTCCTCTCCTCTGCCCTCTCCCAGCGCGGCCCATCTTCAGTCCCCTACGAAGAGTCCAAC 154
||||| ||||| || |||||||| || ||||| || | ||||||||| ||| ||| |
Sbjct 88 TTCCTTTCCTCCGCACTCTCCCAACGTGGCCCTTCCGCTCTCCCCTACGCCGAGACCACC 147
Query 155 AAGTGGTTGATCCGGCAACATCTACTTAACCTAATCTCTTCTTACCCTTCCTTAGAGCCC 214
|||| | | ||||| ||||| || || |||||||||||||| ||| ||||| | || |||
Sbjct 148 AAGTCGCTAATCCGTCAACACCTCCTCAACCTAATCTCTTCCTACACTTCCCTCGACCCC 207
Query 215 AAAACGGC-ATCGTTTATGCACAACGATGGTCGCTCCGTCAACCTCCTTCAAGCAGATGG 273
|||||||| | |||||| ||||||||||| || ||||| | |||||| ||||| || ||
Sbjct 208 AAAACGGCGA-CGTTTACACACAACGATGGCCGATCCGTGATCCTCCTCCAAGCCGACGG 266
Query 274 TACGATTCCGATGCCTTTTCATGGAGTCACCTATAACATACCTGT-GATTATCTGGCTCC 332
||| || ||||||||||| || || |||| ||| ||||| || || | | ||||||||||
Sbjct 267 TACAATCCCGATGCCTTTCCAAGGCGTCAACTACAACATCCCCGTCG-TCATCTGGCTCC 325
Query 333 TCGAGTCATATCCTCGTC-ATCCTCCTTGCGTCTATGTGAATCCC-AC-CGCTGATATGA 389
|||| || || |||| | |||||||||||||||| ||||| ||| || ||| || ||||
Sbjct 326 TCGAATCTTACCCTC-ACTATCCTCCTTGCGTCTACGTGAA-CCCTACGCGC-GACATGA 382
Query 390 TCATCAAGCGACCTCACGC-ACATGTCACTCCTTCTGGTCTCGTTTCTCTTCCGTACCTT 448
||||||||||||||||| | | ||||| |||||||||| ||||| |||||||| ||||||
Sbjct 383 TCATCAAGCGACCTCACACTA-ATGTCTCTCCTTCTGGACTCGTCTCTCTTCCTTACCTT 441
Query 449 CAGAATTGGGTCTACCCTAGCTCCAATCTCGTAGATCTCGTCTC-CGATCTCAGCGCTGC 507
|| |||||||| |||||||||||||||||||||||||||| ||| | |||||||||| ||
Sbjct 442 CAAAATTGGGTTTACCCTAGCTCCAATCTCGTAGATCTCGCCTCTC-ATCTCAGCGCCGC 500
Query 508 TTT-TGCTCGTGATCCGCCTCTTTATTCTCGACGCCGTCCTCAGCCACCGCCACCGTCTC 566
|| | | ||||||||||| ||||| |||| ||||||||||| | |||| ||||||||
Sbjct 501 CTTCTCC-CGTGATCCGCCGCTTTACTCTCAACGCCGTCCTC--CT-CCGCAACCGTCTC 556
Query 567 CT 568
||
Sbjct 557 CT 558
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58278074850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5