BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12410.1
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478600 jgi|Araly1|478600|fgenesh2_kg.3__1301__AT3G12410.1 1007 0.0
> Ahg478600 jgi|Araly1|478600|fgenesh2_kg.3__1301__AT3G12410.1
Length=815
Score = 1007 bits (545), Expect = 0.0
Identities = 657/710 (93%), Gaps = 12/710 (2%)
Strand=Plus/Plus
Query 1 AATGGCTTCCCCGACGATAAGAACCGTCGCAAGTTACAACACTCACCTAGAGTACTCCGT 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATGGCTTCTCCGACGATAAGAACCGTCGCAAGTTACAACACTCACCTAGAGTACTCCGT 60
Query 61 CGATTTCTTTGGAGACGAGTTCATCGTCACCGTAACGTG-GGATTCTTCCGTCATCAGCC 119
|||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||
Sbjct 61 CGATTTCTTTGGAGACGAGTTCATCGTCACCGTAAC-TCCGGATTCCTCCGTCATCAGCC 119
Query 120 GTTGGATTCGCAACGTCCTCTTCAACAACCGTTTCTCCTCTCACCCTCTCGTCGTTGGAG 179
||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 GTTGGATTCGCGACGTCCTCTTTAACAACCGTTTCTCCTCTCACCCTCTCGTCGTTGGAG 179
Query 180 TTGGCGTCCAGTGGACACCGTT-TAGTTATTACTCCGATCCAA-G-ACCGAATAACTACT 236
| |||||||||||||| || || || ||||||| ||||||| | | |||| ||||||
Sbjct 180 TCGGCGTCCAGTGGACTCCTTTCTA-TTATTACGCCGATCCTCTGGA--GAATGACTACT 236
Query 237 ACGCCGATCCTCCGCC-GATAAGATACTACTCAGATAATCCAGCGGATATTCTCCAGTTA 295
|||||||| ||||| | | || || |||||||||||||||||||||||||||||||||||
Sbjct 237 ACGCCGATGCTCCGGCTGGTA-GAAACTACTCAGATAATCCAGCGGATATTCTCCAGTTA 295
Query 296 TGCGTGGGTAATCGATGTCTCATCATCCAGTTAGGTTACTGTGACCAAGTACCTAACAAC 355
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 296 TGCGTGGGTAATCGGTGTCTCATCATCCAGTTAGGTTACTGTGAGCAAGTCCCTAACAAT 355
Query 356 CTCCGCAGTTTCTTAGCAGATCCAGAAACCACGTTCGTCGGTGTCTGGAATGGTCAAGAT 415
|||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||
Sbjct 356 CTCCGCAGTTTCTTAGGAGATCCAGAAACCACGTTCGTAGGCGTTTGGAATGGTCAAGAT 415
Query 416 GCAGGAAAGCTTGCTCGGTGTTGCCACCAGTTGGAGATCGGAGAACTTCTGGACATAAGG 475
||||||||||| ||||| |||||||||||| ||||||| || |||||||| |||||||||
Sbjct 416 GCAGGAAAGCTGGCTCGATGTTGCCACCAGCTGGAGATTGGGGAACTTCTTGACATAAGG 475
Query 476 CGGTACGTGACTGATTCGTGGGGAAGGAGCATGAGGCGTT-CTTCGTTTGAAGAGATTGT 534
| |||||||| ||||||||||||||||||||||||||||| || |||||| |||||||||
Sbjct 476 CAGTACGTGAATGATTCGTGGGGAAGGAGCATGAGGCGTTGCT-CGTTTGCAGAGATTGT 534
Query 535 TGAGGAATGTATGGGCTATCAAGGAGTGATGCTAGATCCGGAGATAAGCATGAGCGATTG 594
||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 535 TGAGGAATGTATGGGTTATCAAGGAGTGACGCTAGATCCGGAGATAAGCATGAGTGATTG 594
Query 595 GACCGCTTACGATCTAGACCTTGATCAGATTCTTCAGGCGTCACTAGATGCTTACGTTTG 654
||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 GACCGTTTATGACCTAGACCTTGATCAGATTCTTCAGGCGTCACTAGATGCTTACGTTTG 654
Query 655 CCATCAGCTTGGTGTTTGGACTCGTCTCTGGGAAGTTTGAAAACAAGTAT 704
||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 655 CCATCAGCTTGGTGTTTGGGCTCGTCTTTGGGAAGTTTGAAAACAAGTAT 704
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34310625300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5