BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12420.1
Length=558
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478601 jgi|Araly1|478601|fgenesh2_kg.3__1302__AT3G12420.1 401 2e-111
Ahg478600 jgi|Araly1|478600|fgenesh2_kg.3__1301__AT3G12410.1 102 2e-21
> Ahg478601 jgi|Araly1|478601|fgenesh2_kg.3__1302__AT3G12420.1
Length=982
Score = 401 bits (217), Expect = 2e-111
Identities = 274/301 (91%), Gaps = 5/301 (2%)
Strand=Plus/Plus
Query 9 GACGATAAGAACCGGCGGTTACTACTCTACTCACCAAGAGTACTCTATCGATGTCTTCGG 68
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||
Sbjct 9 GACGATAAGAACCGGCGGTAACTACTCTACCCACCAAGAGTACTCTATCGATGTCTTTGG 68
Query 69 AAACACGTTATCCGTCACCGTAACTTCGGATTTCGCCATCATCAGCCAATGGATCCATGA 128
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 69 AAACGCGTTATCCGTCACCGTAACCTCGGATTTCGCCATCATCAGCCAATGGATCCGTGA 128
Query 129 GGTTGAATACAACAACTGTCGTCCGTACTATCTACAACCTCTCGTCGTTGGAGTCGGCGT 188
||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 129 GGTCCTCTACAACAACTGTGGTCCGTACTATCCACAACCTCTCGTCGTTGGAGTCGGCGT 188
Query 189 CCAGTGGACACCGCCAGTAAGTTACGACGCCAATCCTCCACCGGATAGGTACTACTCCGA 248
|||||||||||||||| ||||||||||||| ||||||||| || ||||||||||||||||
Sbjct 189 CCAGTGGACACCGCCACTAAGTTACGACGCTAATCCTCCATCGAATAGGTACTACTCCGA 248
Query 249 TCATCATCCACCGCGTAGTTACGAT-CCTAATCCTCCACCGAATAGGTACTACTCGGATC 307
||| | | || |||| ||||||| || |||||||||||||||||||| ||||| ||||
Sbjct 249 TCAGC--C-ACTGCGTGGTTACGACGCC-AATCCTCCACCGAATAGGTATTACTCCGATC 304
Query 308 A 308
|
Sbjct 305 A 305
Score = 285 bits (154), Expect = 2e-76
Identities = 190/207 (92%), Gaps = 3/207 (1%)
Strand=Plus/Plus
Query 320 ATCCTCCGGCGGATACTCTCCAGTTATGCGTGGGTAACCAATGTCTCATCATCCAGTTAT 379
||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 572 ATCCTCCTGCGGATACTCTCCAGTTATGCGTGGGTAACAAATGTATCATCATCCAGTTAG 631
Query 380 GTCACTGTGACCAAGTCCCTACCAGTCTGCGCAGTTTCTTGACCGATCCAAATACCACGT 439
| ||||||||||||||||||| ||||| |||| ||||||||| ||||| | |||||||
Sbjct 632 GCCACTGTGACCAAGTCCCTAATAGTCTCCGCACTTTCTTGACGGATCC-AGGACCACGT 690
Query 440 TCGTCGGCGTTTGGAATAGTCAAGACGCAGGAAAGCTGGCGAGATCTAAACATCAGTTAG 499
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
Sbjct 691 TCGTCGGCGTTTGGAATAGTCAAGACGCAAGAAAGCTGGCGATATCTAAACATCAGTT-G 749
Query 500 -AGATCGGGAAACTTCTAGACATAAGG 525
||||||||||||||||||||||||||
Sbjct 750 CAGATCGGGAAACTTCTAGACATAAGG 776
> Ahg478600 jgi|Araly1|478600|fgenesh2_kg.3__1301__AT3G12410.1
Length=815
Score = 102 bits (55), Expect = 2e-21
Identities = 151/195 (77%), Gaps = 16/195 (8%)
Strand=Plus/Plus
Query 8 CGACGATAAGAACCG--GC-GGTTACTACTCTACTCACCAAGAGTACTCTATCGATGTCT 64
||||||||||||||| || ||||| | | ||||||| ||||||||| ||||| |||
Sbjct 12 CGACGATAAGAACCGTCGCAAGTTAC-A-AC-ACTCACCTAGAGTACTCCGTCGATTTCT 68
Query 65 TCGGAAAC-ACGTT-ATCCGTCACCGTAACTTCGGATTTCGCCATCATCAGCCAATGGAT 122
| ||| || | ||| || ||||||||||||| |||||| | || ||||||||| |||||
Sbjct 69 TTGGAGACGA-GTTCAT-CGTCACCGTAACTCCGGATTCCTCCGTCATCAGCCGTTGGAT 126
Query 123 CCATGAGGTTGAATACAACAACTGTCGTCCGTACTATCTACAACCTCTCGTCGTTGGAGT 182
| || || | |||||| || | | | | ||| || |||||||||||||||||
Sbjct 127 TCGCGACGTCCTCTTTAACAACCGT--TTC-T-C-CTCT-CACCCTCTCGTCGTTGGAGT 180
Query 183 CGGCGTCCAGTGGAC 197
|||||||||||||||
Sbjct 181 CGGCGTCCAGTGGAC 195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20375084526
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5