BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G12460.1

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg318016 jgi|Araly1|318016|fgenesh1_pm.C_scaffold_3001032           318    3e-86
  Ahg478600 jgi|Araly1|478600|fgenesh2_kg.3__1301__AT3G12410.1         174    7e-43


> Ahg318016 jgi|Araly1|318016|fgenesh1_pm.C_scaffold_3001032
Length=390

 Score =  318 bits (172),  Expect = 3e-86
 Identities = 210/227 (93%), Gaps = 7/227 (3%)
 Strand=Plus/Plus

Query  1    ATGGCTCCGACAATCAGAACCATCGG-ATCTTACGCTACTCAGCAAAGGTACTC-AGTCG  58
            |||||||||| ||||||||||||||| ||| |||||||||||| ||| |||||| |||||
Sbjct  12   ATGGCTCCGAGAATCAGAACCATCGGAATC-TACGCTACTCAGAAAAAGTACTCAAGTCG  70

Query  59   ATTTCTTTGGAGAAGAGCTTT-TCGTCACCGTAACGCCGGATCCTTCCGTCATCGGCCAA  117
            ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct  71   ATTTCTTTGGAGAAGAG-TTTATCGTCACCGTAACGCCGGATCCTTCCGTCATCGGCCAA  129

Query  118  TGGATTCACGACGTCTTCTTCCACAACCGTCTC-TCTTCTCACCCTCTCGTCGTTGGAGT  176
            ||||||||||||||| | ||||||| ||| ||  || |||||||||||||| ||||||||
Sbjct  130  TGGATTCACGACGTCCTATTCCACAGCCG-CTTATCATCTCACCCTCTCGTTGTTGGAGT  188

Query  177  CGGCGTTCAGTGGACACCCTCTGGTTACCACCCTGCTTCTCCACCGG  223
            ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  189  CGGCGTTCAGTGGACACCCTCTGGTTATCACCCTGCTTCTCCACCGG  235


> Ahg478600 jgi|Araly1|478600|fgenesh2_kg.3__1301__AT3G12410.1
Length=815

 Score =  174 bits (94),  Expect = 7e-43
 Identities = 160/191 (84%), Gaps = 8/191 (4%)
 Strand=Plus/Plus

Query  5    CTCCGACAATCAGAACCATCGGATCTTAC-GCTACTCAGCAAAG-GTACTCAGTCGATTT  62
            ||||||| || |||||| ||| |  ||||  | ||||| |  || |||||| ||||||||
Sbjct  9    CTCCGACGATAAGAACCGTCGCAAGTTACAAC-ACTCA-CCTAGAGTACTCCGTCGATTT  66

Query  63   CTTTGGAGAAGAGCTT-TTCGTCACCGTAACGCCGGA-TCCTTCCGTCATCGGCCAATGG  120
            ||||||||| ||| ||  ||||||||||||| ||||| ||| ||||||||| |||  |||
Sbjct  67   CTTTGGAGACGAG-TTCATCGTCACCGTAACTCCGGATTCC-TCCGTCATCAGCCGTTGG  124

Query  121  ATTCACGACGTCTTCTTCCACAACCGTCTCTCTTCTCACCCTCTCGTCGTTGGAGTCGGC  180
            |||| ||||||| ||||  |||||||| |||| |||||||||||||||||||||||||||
Sbjct  125  ATTCGCGACGTCCTCTTTAACAACCGTTTCTCCTCTCACCCTCTCGTCGTTGGAGTCGGC  184

Query  181  GTTCAGTGGAC  191
            || ||||||||
Sbjct  185  GTCCAGTGGAC  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26838533568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5