BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12470.1 Length=771 Score E Sequences producing significant alignments: (Bits) Value Ahg478602 jgi|Araly1|478602|fgenesh2_kg.3__1303__AT3G12470.1 804 0.0 > Ahg478602 jgi|Araly1|478602|fgenesh2_kg.3__1303__AT3G12470.1 Length=742 Score = 804 bits (435), Expect = 0.0 Identities = 657/760 (86%), Gaps = 32/760 (4%) Strand=Plus/Plus Query 26 AAGAAGAAGACAGATCAATGGCTCCGACGATCAAAAGAATCAGAAGTTTCCGTACTCACC 85 |||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| Sbjct 1 AAGAAGAAGACAGATCAATGGCTCTGACGATCAAAACAATCGGAAGTTTCCGTACTCACC 60 Query 86 AAAAACACTTTG-TCGATTTTTTCGGAGACGACTTGATCGTCACCGTTACGCCGACTGCT 144 |||||||| ||| || |||| |||||||||||||||||||||||||||||||||||| || Sbjct 61 AAAAACAC-TTGATCAATTTCTTCGGAGACGACTTGATCGTCACCGTTACGCCGACTACT 119 Query 145 TCCGTTATCCGCCGCTGGATTCGTAGCGTCCGCTCCTACAACCGTAATCACTCGGTACAT 204 |||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||| Sbjct 120 ACCGTAATCCGCCGCTGGATTCGCAGCGTCCGCTCCTACAACCGTAATCACTCAGTGCAT 179 Query 205 CCTCTCGTCGTTGGAATCGGTGTTCAGTGGAGACCGGATAGTTCCGATCCAGATCCACCA 264 ||||||||| | |||| | | | | | | | | |||||||||||||||| | Sbjct 180 CCTCTCGTC----G--TCGG-G---A-TCG-G--C-GTTCGTTCCGATCCAGATCCTTCG 224 Query 265 CCAAAAACTCTCCAGTTGTGCGTCGGTAGTCGCTGTCTCATCATCCAACTAGGTTACAAT 324 ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 225 CCAAAAACTCTCCAGTTATGCGTTGGTAGTCGCTGTCTCATCATCCAGTTAGGTGACTGT 284 Query 325 TACGGTCTCCCAAAAGTCCTCCGCACTTTCCT-TGCCGATCCCAAAACGACTTTCGTCGG 383 ||| ||||||| || || ||||| |||||||| | |||| ||||| || ||||| ||||| Sbjct 285 TACTGTCTCCCCAACGTACTCCGAACTTTCCTCT-CCGACCCCAATACCACTTTTGTCGG 343 Query 384 CGTTTGGAACGGCCAAGACCAGAAAAAACTCGAGAAATGTAGGCATCGAGTGGAGATCGG 443 ||| ||||||||||||||||||| |||||||| | ||||||||||| | |||||||||| Sbjct 344 CGTCTGGAACGGCCAAGACCAGAGAAAACTCGCTACATGTAGGCATCAATTGGAGATCGG 403 Query 444 GAAGCTTCTGGACATAAGGATGTTCGTGAGAGATTCGAGAGGGGCTAG-GATGTGTTTTT 502 ||||||||| ||||||||| ||| ||||| |||||||||| || | | |||| |||||| Sbjct 404 GAAGCTTCTAGACATAAGGCTGTACGTGATAGATTCGAGA-AGGATTGCGATGCGTTTTT 462 Query 503 GTTCGTTTGAACAGATCGTGAAGGAGCGTTTGGGTCGCGTAGGAGTGAGGTTAGATCCGG 562 |||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||| Sbjct 463 GTTCGTTTGAACAGATCGTGAAAGAGCGTTTGGGACGCGAAGGTGTGAGGTTAGATCCGG 522 Query 563 CGATTTGTATGAGCGATTGGGGCGTTTATAACCTTAACCATTATCAGGTACTTCAGGCGT 622 |||||||||||||||||||||||||||| | || | |||| |||||||||||||||||| Sbjct 523 CGATTTGTATGAGCGATTGGGGCGTTTACATGCTCAGCCATGATCAGGTACTTCAGGCGT 582 Query 623 CGATTGAGTCGTATGTTTGCTTTAAGCTCGCTGTTGAGGAACGTCTCTGG-AACTTAAAA 681 |||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 583 CGATTGAGTCATGTGTTTGCTTTAAGCTCGCTGTTGAGGAACGTCTCTGGGAACTTAAAA 642 Query 682 GTTGC--TG------CTAATCTTGTGATTTGAATTTGTTGTTGTTCTTCTCTCTTTATCA 733 |||| || |||||||||||||||||| ||||||||||||| |||||||||| Sbjct 643 GTTGTAATGGTGTTGCTAATCTTGTGATTTGAACAAGTTGTTGTTCTTCACTCTTTATCA 702 Query 734 AT-CAA-CGTCTTCTTCTAATTCATGAAAGTTTTCATGTT 771 | ||| | | ||||||||||||| ||||||||| |||| Sbjct 703 AGACAATCAACGTCTTCTAATTCATAAAAGTTTTCGTGTT 742 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28439696082 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5