BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12470.1
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478602 jgi|Araly1|478602|fgenesh2_kg.3__1303__AT3G12470.1 804 0.0
> Ahg478602 jgi|Araly1|478602|fgenesh2_kg.3__1303__AT3G12470.1
Length=742
Score = 804 bits (435), Expect = 0.0
Identities = 657/760 (86%), Gaps = 32/760 (4%)
Strand=Plus/Plus
Query 26 AAGAAGAAGACAGATCAATGGCTCCGACGATCAAAAGAATCAGAAGTTTCCGTACTCACC 85
|||||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct 1 AAGAAGAAGACAGATCAATGGCTCTGACGATCAAAACAATCGGAAGTTTCCGTACTCACC 60
Query 86 AAAAACACTTTG-TCGATTTTTTCGGAGACGACTTGATCGTCACCGTTACGCCGACTGCT 144
|||||||| ||| || |||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 61 AAAAACAC-TTGATCAATTTCTTCGGAGACGACTTGATCGTCACCGTTACGCCGACTACT 119
Query 145 TCCGTTATCCGCCGCTGGATTCGTAGCGTCCGCTCCTACAACCGTAATCACTCGGTACAT 204
|||| ||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 120 ACCGTAATCCGCCGCTGGATTCGCAGCGTCCGCTCCTACAACCGTAATCACTCAGTGCAT 179
Query 205 CCTCTCGTCGTTGGAATCGGTGTTCAGTGGAGACCGGATAGTTCCGATCCAGATCCACCA 264
||||||||| | |||| | | | | | | | | |||||||||||||||| |
Sbjct 180 CCTCTCGTC----G--TCGG-G---A-TCG-G--C-GTTCGTTCCGATCCAGATCCTTCG 224
Query 265 CCAAAAACTCTCCAGTTGTGCGTCGGTAGTCGCTGTCTCATCATCCAACTAGGTTACAAT 324
||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || |
Sbjct 225 CCAAAAACTCTCCAGTTATGCGTTGGTAGTCGCTGTCTCATCATCCAGTTAGGTGACTGT 284
Query 325 TACGGTCTCCCAAAAGTCCTCCGCACTTTCCT-TGCCGATCCCAAAACGACTTTCGTCGG 383
||| ||||||| || || ||||| |||||||| | |||| ||||| || ||||| |||||
Sbjct 285 TACTGTCTCCCCAACGTACTCCGAACTTTCCTCT-CCGACCCCAATACCACTTTTGTCGG 343
Query 384 CGTTTGGAACGGCCAAGACCAGAAAAAACTCGAGAAATGTAGGCATCGAGTGGAGATCGG 443
||| ||||||||||||||||||| |||||||| | ||||||||||| | ||||||||||
Sbjct 344 CGTCTGGAACGGCCAAGACCAGAGAAAACTCGCTACATGTAGGCATCAATTGGAGATCGG 403
Query 444 GAAGCTTCTGGACATAAGGATGTTCGTGAGAGATTCGAGAGGGGCTAG-GATGTGTTTTT 502
||||||||| ||||||||| ||| ||||| |||||||||| || | | |||| ||||||
Sbjct 404 GAAGCTTCTAGACATAAGGCTGTACGTGATAGATTCGAGA-AGGATTGCGATGCGTTTTT 462
Query 503 GTTCGTTTGAACAGATCGTGAAGGAGCGTTTGGGTCGCGTAGGAGTGAGGTTAGATCCGG 562
|||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||||||||
Sbjct 463 GTTCGTTTGAACAGATCGTGAAAGAGCGTTTGGGACGCGAAGGTGTGAGGTTAGATCCGG 522
Query 563 CGATTTGTATGAGCGATTGGGGCGTTTATAACCTTAACCATTATCAGGTACTTCAGGCGT 622
|||||||||||||||||||||||||||| | || | |||| ||||||||||||||||||
Sbjct 523 CGATTTGTATGAGCGATTGGGGCGTTTACATGCTCAGCCATGATCAGGTACTTCAGGCGT 582
Query 623 CGATTGAGTCGTATGTTTGCTTTAAGCTCGCTGTTGAGGAACGTCTCTGG-AACTTAAAA 681
|||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 583 CGATTGAGTCATGTGTTTGCTTTAAGCTCGCTGTTGAGGAACGTCTCTGGGAACTTAAAA 642
Query 682 GTTGC--TG------CTAATCTTGTGATTTGAATTTGTTGTTGTTCTTCTCTCTTTATCA 733
|||| || |||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 643 GTTGTAATGGTGTTGCTAATCTTGTGATTTGAACAAGTTGTTGTTCTTCACTCTTTATCA 702
Query 734 AT-CAA-CGTCTTCTTCTAATTCATGAAAGTTTTCATGTT 771
| ||| | | ||||||||||||| ||||||||| ||||
Sbjct 703 AGACAATCAACGTCTTCTAATTCATAAAAGTTTTCGTGTT 742
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28439696082
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5