BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12480.1
Length=1364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478603 jgi|Araly1|478603|fgenesh2_kg.3__1304__AT3G12480.1 1857 0.0
> Ahg478603 jgi|Araly1|478603|fgenesh2_kg.3__1304__AT3G12480.1
Length=1289
Score = 1857 bits (1005), Expect = 0.0
Identities = 1211/1307 (93%), Gaps = 27/1307 (2%)
Strand=Plus/Plus
Query 43 TTTTAATTTTTCCATCGCACGGAGATTGTAACAAGGAAACCGCCGTCGCCGGATCTGATA 102
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TTTT-ATTTTTCGATCGCACGGAGATTGTAACAAGGAAACCGCCGTCGCCGGATCTGGTA 59
Query 103 GT--GCATATCCATGAAGTAGAAGACGAAGAAACTTACTTTCTGATCTTAGAACGGAGTA 160
|| || ||||||||||||||| ||||||| || |||||||||||||||| |||| |||
Sbjct 60 GTGAGCGTATCCATGAAGTAGACGACGAAGCAA-TTACTTTCTGATCTTAAAACGTAGTT 118
Query 161 TATGTACAGAAGATTCGCGTCCCTCAATTTTTGATCTCAAGGGTCGGGTTTACCtttttt 220
| ||||||||||||| || ||||||||||||||||| |||||| ||||||| |||||||
Sbjct 119 TTTGTACAGAAGATT--CG-CCCTCAATTTTTGATCTGAAGGGTTGGGTTTA-CTTTTTT 174
Query 221 tCCTTCTTATTTTT-GGTGGCT-TTGCGTTTTCTCATTCGACGATTTCTGGATTTGGGGA 278
| || || ||||| ||||| | |||||||||||||||||||| |||||||| |||||||
Sbjct 175 T--TT-TT-TTTTTGGGTGG-TGTTGCGTTTTCTCATTCGACGGTTTCTGGA-TTGGGGA 228
Query 279 TTTCAAAACCATGAGGAAGAAGCTCGATACTCGGTTCCCAGCTGCTCGTATTAAAAAGAT 338
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 TATCAAAACCATGAGGAAGAAGCTCGATACTCGGTTCCCAGCTGCTCGTATTAAAAAGAT 288
Query 339 TATGCAAGCTGATGAGGATGTTGGCAAGATAGCTTTGGCAGTGCCTGTCTTAGTCTCAAA 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 TATGCAAGCTGATGAGGATGTTGGCAAGATAGCTTTGGCAGTGCCTGTCTTAGTCTCAAA 348
Query 399 ATCTTTGGAGTTGTTCTTGCAAGACCTTTGTGATCGTACATATGAAATTACCCTTGAAAG 458
||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 349 ATCTTTGGAATTGTTCTTGCAAGACCTTTGCGATCGTACATATGAGATTACCCTTGAAAG 408
Query 459 AGGTGCCAAGACTGTGAGCTCATTGCACCTAAAACATTGTGTGGAAAGATATAACGTGTT 518
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGGAGCCAAGACCGTCAGCTCATTGCACCTAAAACATTGTGTGGAAAGATATAACGTGTT 468
Query 519 TGATTTTCTGAGGGAAGTTGTGAGTAAGGTGCCTGACTATGGCCATTCCCAAGGGCAAGG 578
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 469 TGATTTTCTGAGGGAAGTTGTGAGCAAGGTGCCTGACTATGGCCATTCGCAAGGGCAGGG 528
Query 579 ACATGGTGATGTTACCATGGATGATCGCAGCATCTCCAAGAGAAGGAAGCCCATCAGCGA 638
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 529 CCATGGTGATGTCACCATGGATGATCGCACCATCTCCAAGAGAAGGAAGCCCATCAGCGA 588
Query 639 TGAAGTGAATGACAGTGACGAGGAATATAAGAAAAGCAAAACGCAAGAGATAGG-GAGTG 697
||||||||||||||| ||||||||||||||||||||||||||||||||||| || || ||
Sbjct 589 TGAAGTGAATGACAGCGACGAGGAATATAAGAAAAGCAAAACGCAAGAGAT-GGTGAATG 647
Query 698 CTAAGACCAGTGGCAGGGGTGGTAGAGGAAGAGGGCGAGGAAGAGGTCGTGGTGGACGAG 757
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 CTAAGCCCAGTGGCAGGGGTGGTAGAGGAAGAGGGCGAGGAAGAGGTCGTGGTGGACGAG 707
Query 758 CTGCAAAAGCAGCCGAAAGAGAGGGTCTCAACCGCGAGATGGAAGTAGAAGCCGCCA-AT 816
|||||| |||||||||||||||||||| |||||||||||||||| ||||||| |||| ||
Sbjct 708 CTGCAAGAGCAGCCGAAAGAGAGGGTCCCAACCGCGAGATGGAACTAGAAGCTGCCATAT 767
Query 817 TCTGGACAGCCACCACCAGAAGACAATGTCAAGATGCATGCGTCAGAGTCATCACCACAA 876
| ||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 768 -CGGGACAGCCACCTCCAGAAGACAATATCAAGATGCATGTGTCAGAGTCATCACCACAA 826
Query 877 GAGGATGAGAAGAAAGGCATCGACGGCACAGCAGCATCGAACGAAGACACCAAGCAACAC 936
||| |||||||||||| ||| || ||||||| |||||| |||||||||||||||||||||
Sbjct 827 GAGAATGAGAAGAAAGACATTGATGGCACAGTAGCATCAAACGAAGACACCAAGCAACAC 886
Query 937 CTTCAAAGTCCCAAAGAAGGCATTGACTTTGATCTCAACGCTGAATCCCTCGACCTAAAC 996
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 887 CTTCAAAGTCCAAAAGAAGGCATTGCCTTTGATCTCAACGCTGAATCCCTCGACCTAAAC 946
Query 997 GAGACCAAACTGGCACCAGCCACAGGCACAACCACAACCACAACTGCAGCAACAGACTCT 1056
|||||||||||||||||| |||| ||| ||||||||||| || ||| |||| |||||
Sbjct 947 GAGACCAAACTGGCACCAACCACTGGCGCAACCACAACCGCA---GCAACAACGGACTCA 1003
Query 1057 GAGGAGTATTCGGGCTGGCCTATGATGGACATAAGCAAAATGGATCCAGCACAGCTTGCT 1116
||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1004 GAGGAATATTCGGCCTGGCCTATGATGGACATAGGCAAAATGGATCCAGCACAGCTTGCC 1063
Query 1117 AGTCTGGGTAAGAGGATAGACGAGGATGAGGAAGATTATGACGAAGAAGGCTAAGTCATA 1176
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1064 AGTCTGGGTAAGAGGATAGACGAGGATGAGGAAGATTATGACGAAGAAGGTTAAGGCATA 1123
Query 1177 ACAGCAC-TATAGGATATATAGAGTAGCAGCGTTTAGCAGTTTGTCTAGAAAATGCTTCT 1235
|||||| | ||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1124 GCAGCACCT-TAGGATATATAGAGTAGCAGCATTTAGCGGTTTGTCTAGAAAATGCTTCT 1182
Query 1236 TCTGTCATCAAAATCTTCTCCT-GTTTCCATTTATTGTATGAACCAAAGATTGCATGCAC 1294
|||||| |||||||||||| || |||||||||||||||| | ||||||||||| |||| |
Sbjct 1183 TCTGTCTTCAAAATCTTCTTCTAGTTTCCATTTATTGTACGGACCAAAGATTGTATGCGC 1242
Query 1295 TCTATGAAACTTAATTT-ATTCTCCTGATTTGTTATTTAAGGTTTTA 1340
| ||||||||||||||| ||||||||||| |||||||||||| ||||
Sbjct 1243 TTTATGAAACTTAATTTTATTCTCCTGATATGTTATTTAAGGGTTTA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51046585863
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5