BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12490.2
Length=866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928970 jgi|Araly1|928970|scaffold_301427.1 933 0.0
> Ahg928970 jgi|Araly1|928970|scaffold_301427.1
Length=651
Score = 933 bits (505), Expect = 0.0
Identities = 604/652 (93%), Gaps = 5/652 (1%)
Strand=Plus/Plus
Query 117 TTTAGGCTTCTGCAACGAAGAGATGGCTTTAGTCGGAGGTGTTGGCGATGTCCCTGCTAA 176
|||||| ||||||||||| || ||||||||| |||| || ||| ||||||| ||||||||
Sbjct 1 TTTAGGGTTCTGCAACGACGACATGGCTTTACTCGGTGGCGTTCGCGATGTTCCTGCTAA 60
Query 177 TCAGAACAGTGGTGAGGTTGAGAGCCTCGCTCGTTTCGCTGTCGATGAACACAACAAGAA 236
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CCAGAACAGTGGTGAGGTCGAGAGCCTCGCTCGTTTCGCTGTCGATGAGCACAACAAGAA 120
Query 237 AGAGAATGCACTTCTTGAGTTTGCGAGAGTTGTGAAGGCGAAAGAACAAGTTGTAGCCGG 296
|||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||||||
Sbjct 121 AGAGAATGCACTTCTTGAGTTTGCTAGAGTGGTGAAAGCTAAAGAACAAGTTGTAGCCGG 180
Query 297 AACACTGCATCACCTGACTCTGGAGATTCTCGAGGCAGGACAGAAGAAGCTTTACGAAGC 356
|||| |||||||||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 181 AACAATGCATCACCTGACTCTGGAGATTCTCGATGCAGGGGAGAAAAAGCTTTACGAAGC 240
Query 357 CAAAGTGTGGGTCAAGCCGTGGTTGAACTTTAAAGAGTTACAGGAGTTCAAGCCT---GC 413
|||||||||||| ||| | |||||||||||||| ||||||||||||||||||||| ||
Sbjct 241 CAAAGTGTGGGTGAAGTCATGGTTGAACTTTAAGGAGTTACAGGAGTTCAAGCCTGCCGC 300
Query 414 CAGTGATGCCCCTGCTATCACTTCCTCCGATCTTGGCTGCAAGCAAGGTGAACATGAATC 473
||||||||||||||| |||||| ||||||||||||||||||| |||| ||||||||||||
Sbjct 301 CAGTGATGCCCCTGCAATCACTCCCTCCGATCTTGGCTGCAAACAAGATGAACATGAATC 360
Query 474 TGGATGGAGGGAAGTTCCCGGAGATGATCCAGAAGTGAAGCATGTTGCTGAGCAGGCTGT 533
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |||||
Sbjct 361 TGGATGGAGGGAAGTTCCAGGAGATGATCCAGAAGTGCAGCACGTTGCTGAGCATGCTGT 420
Query 534 CAAGACCATTCAGCAGAGGTCTAACTCCTTGTTCCCTTATGAACTTCTGGAGGTTGTGCA 593
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 CAAGACCATCCAGCAGAGGTCTAACTCCTTGTTCCCTTATCAACTTCTGGAGGTTGTGCA 480
Query 594 TGCTAAAGCTGAGGTAACCGGCGAGGCTGCAAAATACAACATGCTACTGAAGTTGAAGAG 653
|||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 481 TGCTAACGCTGAGGTTACCGGCGAGGCTGCCAAATACAACATGCTGCTGAAGTTGAAGAG 540
Query 654 GGGAGAAAAAGAGGAAAAGTTCAAGGTGGAAGTTCACAAGAACCATGAAGGTGCTCTTCA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GGGAGAAAAAGAGGAAAAGTTCAAGGTGGAAGTTCACAAGAACCATGAAGGTGCTCTTCA 600
Query 714 TCT-CAACCACGCGGAGCAACACCATGACTAGTCCCTCTCCTTTGTTTATGT 764
|| ||||| | |||||||||||||||||||||||||||| |||||||||
Sbjct 601 -CTTCAACCGCATGGAGCAACACCATGACTAGTCCCTCTCCCCTGTTTATGT 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32061373197
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5