BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12500.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318019 jgi|Araly1|318019|fgenesh1_pm.C_scaffold_3001035 1524 0.0
> Ahg318019 jgi|Araly1|318019|fgenesh1_pm.C_scaffold_3001035
Length=1005
Score = 1524 bits (825), Expect = 0.0
Identities = 947/1006 (94%), Gaps = 7/1006 (1%)
Strand=Plus/Plus
Query 1 ATGCCTCCACAAAAAGAAAACCATAGAACATTGAACAAAATGAAGACTAATCTTTTTCTC 60
|||||| || |||||||| |||||| |||||||||||||||||||||||||||||||| |
Sbjct 1 ATGCCTTCAAAAAAAGAATACCATAAAACATTGAACAAAATGAAGACTAATCTTTTTCCC 60
Query 61 TTTCTCATCTTTTCACTTCTCCTATCATTATCCTCGGCCGAGCAATGTGGTCGCCAAGCT 120
|| |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 61 TTCCTCATCTTCTCACTTCTCTTATCATTTTCCTCGGCCGAGCAATGTGGTCGCCAAGCC 120
Query 121 GGAGGAGCACTCTGCCCCAACGGTCTATGCTGCAGCGAGTTCGGCTGGTGCGGTAACACC 180
| |||||| || |||||||||||||||||||||||| ||| ||| |||||||||||||||
Sbjct 121 GAAGGAGCCCTTTGCCCCAACGGTCTATGCTGCAGCAAGTACGGATGGTGCGGTAACACC 180
Query 181 GAACCATACTGTAAGCAGCCTGGCTGCCAAAGCCAGTGCACTCCCGGTGGTACTCCTCCT 240
||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 181 GAACCCTACTGTAAGCAGCCTGGCTGCCAAAGCCAGTGCACTCCCGGCGGTA---CTCCT 237
Query 241 GGACCCACCGGCGATCTTTCGGGCATCATTTCAAGTTCTCAGTTCGATGATATGCTTAAG 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GGACCCACCGGCGACCTTTCGGGCATCATTTCAAGTTCTCAGTTCGATGATATGCTTAAG 297
Query 301 CATAGGAATGATGCCGCTTGTCCTGCTAGAGGTTTCTACACTTACAACGCCTTTATCACC 360
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 CATAGGAATGATGCTGCTTGTCCTGCTAGAGGTTTCTACACTTACGACGCCTTTATCACC 357
Query 361 GCTGCAAAGTCCTTCCCCGGTTTTGGCACCACCGGAGACACCGCCACGAGGAAGAAGGAG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCTGCAAAGTCCTTCCCTGGTTTTGGCACCACCGGAGACACCGCCACGAGGAAGAAGGAG 417
Query 421 GTCGCCGCCTTCTTCGGCCAGACTTCCCATGAAACTACAGGTGGATGGGCTACAGCACCA 480
|| |||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||
Sbjct 418 GTTGCCGCCTTCTTCGGCCAGACTTCCCATGAAACCACAGGTGGGTGGGCTTCAGCACCA 477
Query 481 GACGGACCATATTCATGGGGCTACTGTTTCAAGCAAGAACAGAATCCTGCTTCAGACTAC 540
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 478 GACGGACCATTTTCATGGGGCTACTGTTTCAAGCAAGAACAGAATCCTGGTTCAGACTAC 537
Query 541 TGTGAACCGAGCGCCACGTGGCCATGCGCATCTGGCAAACGCTACTACGGAAGAGGACCA 600
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 538 TGTGAACCAAGCGCCACGTGGCCATGCGCATCTGGCAAACGCTACTATGGAAGAGGACCG 597
Query 601 ATGCAACTGTCGTGGAACTACAATTACGGTCTATGCGGTAGAG-CAATAGGAGTTGACTT 659
||||| ||| ||||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 598 ATGCAGCTGACGTGGAACTACAATTACGGTCCATGCGGTAGAGACA-TAGGAGTTGACTT 656
Query 660 ACTCAACAACCCTGACCTTGTTGCCAACGACGCAGTGATCGCTTTCAAAGCCGCGATTTG 719
|||||||||||| ||||| || |||||||||||||||||| |||||||| ||||||||||
Sbjct 657 ACTCAACAACCCCGACCTCGTGGCCAACGACGCAGTGATCTCTTTCAAATCCGCGATTTG 716
Query 720 GTTCTGGATGACTGCTCAGCCTCCCAAACCGTCTTGCCATGCCGTGATAGCCGGCCAGTG 779
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 717 GTTCTGGATGACTGCTCAGCCTCCCAAACCGTCGTGCCACGCCGTGATAGCCGGCCAATG 776
Query 780 GCAGCCTTCAGACGCCGACCGTGCCGCCGGGAGATTACCGGGTTATGGAGTGATTACGAA 839
|||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 777 GCAGCCGTCAGACGCCGACCGTGCAGCCGGGAGATTACCAGGTTACGGAGTGATTACGAA 836
Query 840 CATCATTAACGGTGGATTGGAGTGTGGACGTGGCCAAGACGGGAGAGTCGCCGATCGTAT 899
||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 837 CATCATTAACGGTGGATTGGAATGCGGACGTGGCCAAGACGGGAGAGTCGCGGATCGTAT 896
Query 900 AGGGTTTTATCAGAGGTATTGTAACATATTTGGTGTTAATCCTGGTGGTAATCTTGATTG 959
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 897 AGGGTTTTATCAGAGGTATTGTAACATATTTGGGGTTAATCCTGGTGGTAATCTTGATTG 956
Query 960 TTACAACCAAAGATCCTTCGTTAACGGCCTCCTCGAA-GCTGCTAT 1004
|||||||||||||||||| | ||||||||||||| || ||||||||
Sbjct 957 TTACAACCAAAGATCCTTTGGTAACGGCCTCCTC-AACGCTGCTAT 1001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5