BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12530.1
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928973 jgi|Araly1|928973|scaffold_301430.1 1057 0.0
> Ahg928973 jgi|Araly1|928973|scaffold_301430.1
Length=673
Score = 1057 bits (572), Expect = 0.0
Identities = 633/662 (96%), Gaps = 5/662 (1%)
Strand=Plus/Plus
Query 45 TTTCTTGAG---ATACATCAATGGCTGGCCAGACTGATCCTCATATTTCACTGTTTTCTC 101
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TTTCTTGAGATAATACATCAATGGCTGGCCAGACTGATCCTCATATTTCACTTTTTTCTC 60
Query 102 CACAAGAGGTTGAGTTTATGGCAGAGGACGAGCTGGTCGAGATTGTTCCTAATATGAACA 161
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 61 CACAAGAGGTTGAGTTTATGGCAGAGGACGAACTGGTGGAGATTGTTCCTAATATGAACA 120
Query 162 TGGAGCAACTCAATTTCATCAGTGGCGATTTCGGTCGGTTCATTCCTCAGATTCCGACAA 221
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TGGAGCAACTCAATTTCATCAGTGGGGATTTCGGTCGGTTCATTCCTCAGATTCCGACAA 180
Query 222 AGGTGCCTCTGTGGCTTGCAGTGGCACTGAAGAGGAGAGGAAAATGCACTTTCCGGCCTC 281
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 AGGTGCCTCTGTGGCTTGCAGTGGCACTGAAGAGGAGAGGCAAATGCACTTTCCGGCCTC 240
Query 282 CGGGGTGGATGTCTGTTGATAATTTGACTCAGATCTTGGAAGCAGAACGTGAATCTCAGT 341
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGGATGGATGTCTGTTGATAATTTGACTCAGATCTTGGAAGCAGAACGTGAATCTCAGT 300
Query 342 CGACATTCCAGGCATTACCATTTAGTTACGTGGAGATTGCCAGACTACTTTTTGACCATG 401
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGACATTTCAGGCATTACCATTTAGTTACGTGGAGATTGCCAGACTACTTTTTGACCATG 360
Query 402 CACGTGACGATATTCCAGACATGTATATGGTGAGATCCCTAGTCGAGGACATCAGAGATG 461
||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 361 CACGTGATGATATTCCAGACATGTATATGGTGAGATCCCTAGTTGAGGATATCAGAGATG 420
Query 462 TACGGCTTCACAAACTTGAGACTAACTTAGGATCATTTCAAGGTACATCTGCAGTAAAGA 521
| || ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 421 TGCGCCTTCACAAACTCGAGACTAACTTGGGATCATTTCAAGGTACTTCTGCAGTAAAGA 480
Query 522 TCTCTAATGTATCGGCAATGGAAGTAAACATAGTACGCCCATTTGTGATAAGAGCCTTAG 581
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 481 TCTCTAATGTATCGGCAATGGAAGTGAACATAGTCCGACCATTTGTGATAAGAGCCTTAG 540
Query 582 AAGCATTTTATAAGCATGACAAGCCAGAGGCTGATGTAGACAGAGACACCAGAAGTAGTA 641
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 AAGCATTTTACAAGCATGACAAGCCAGAGGCTGATGTAGACCGAGACACCAGAAGTAGTA 600
Query 642 GACAACAGCGTGAAACCAACAATGAACCAAGGAGACCTCT-AAGGCAACGCTAGGTAGCT 700
|||||||||||||| ||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 601 GACAACAGCGTGAAGCCAACAATGAACCAAGGAGGCC-CTTAAGGCAACGCTAGGGAGCT 659
Query 701 TC 702
||
Sbjct 660 TC 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35339944059
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5