BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12540.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478609 jgi|Araly1|478609|fgenesh2_kg.3__1310__AT3G12540.1 2494 0.0
> Ahg478609 jgi|Araly1|478609|fgenesh2_kg.3__1310__AT3G12540.1
Length=1533
Score = 2494 bits (1350), Expect = 0.0
Identities = 1475/1536 (96%), Gaps = 6/1536 (0%)
Strand=Plus/Plus
Query 1 ATGAAAATGCAAGGAGAGCTAGAGGACGAACAAGC-CTTAAACAAGGCTCTACGTGATAT 59
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 ATGAAAATGCAAGGAGAGCTAGAGGACGAACAAGCAC-TAAACAAGGCTCTACGTGATAT 59
Query 60 GCATCGTGGTCCCGTCATGTCTCAGCCTCGTCTCTCTTTATTGCTTCTTCCTCCTCAGGT 119
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 60 GCATCGTGGACCCGTCATGTCTCAGCCTCGTCTCTCTTTACTGCTTCTTCCTCCTCAGGT 119
Query 120 TCAAGAGCTAATAGAGGAGCTTGCGACGGTTGAGGCAGAGATACTCTGTCTTGAGAAACG 179
||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCAGGAGCTTATAGAAGAGCTTGCGACGGTTGAGGCAGAGATACTCTGTCTTGAGAAACG 179
Query 180 AATCCAAGACTTGAAACTTGATGTGTATAGTGAGAAAAAAGAGAACAAAGAACTTGAAGA 239
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 AATCCAAGACTTGAAACTTGATGTGTATAGTGAGAAAAAAGAGAATAAAGAACTTGAAGC 239
Query 240 CAGTATTGATGAAGGAGAAGAAGAGAGGATGATGAACCCTAAGAGACTACTACAAAGGCA 299
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 CAGTATTGATCAAGGAGAAGAAGAGAGGATGATGAATCCTAAGAGACTACTACAAAGGCA 299
Query 300 GAATCATCTTCCTTGCGACGCTGACAATGACCTTATAAAGATGAGATCTGAGGATCTAAA 359
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 GAATCATCTTCCTTGCGACGCTGACAATGACATTATAAAGATGAGATCTGAGGATCTAAA 359
Query 360 ACAGAGATCAAAGTCCCAGAGTTATGGAGATCATCATGTTGTCAAGGATATTCAAATGAA 419
||| ||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 360 ACACAGATCCAAGTCCCAGAGTTATGCAGATCATCATATTGTCAAGGATATTCAAATGAA 419
Query 420 CAGTCCACGTACTCATGCGTCAATTGGATCAACCATGGAGTTCTCATCAAGAATCCATTC 479
|||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 420 CAGTCCTCGTACTCATGCGTCAATTGGATCATCTATGGAGTTCTCATCAAGAATCCATTC 479
Query 480 TTCGACTTTTTCTGATGGAATGTCAAGAACACAAGAGAAG-AATAATGTGCAAGAGACGA 538
|||||||||||||||||||| ||||||||||||||| || || ||||||||||||||||
Sbjct 480 TTCGACTTTTTCTGATGGAACATCAAGAACACAAGAG-AGTAAGAATGTGCAAGAGACGA 538
Query 539 CACCAAATGGAGTATCGGAAGATCTGGTGAAGTGCTTGATGGGAATCTATCTGGAACTCA 598
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CACCAAACGGAGTATCGGAAGATCTGGTGAAGTGCTTGATGGGAATCTATCTGGAACTCA 598
Query 599 ACAGGTCATCGCGTGAGCGAGAAGGGTCAAAAACTGTTTCAAAGCTGAGCCTCACACACC 658
||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 ACAGGTCTTCGCGTGAACGAGAAGGGTCAAAAACTGTTTCAAAGCTGAGCCTTACACACC 658
Query 659 TCAAGAACGCTTCTTTCAAACGCAAATCGGTGTATGACCATAACGCATCTAATCTTGATC 718
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 659 TCAAGAACGCTTCTTTCAAACGCAAATCGGTGTATGACCATAACGCATCGAATCTTGATC 718
Query 719 CATATGGAGCTGTCATGGGGACTTCTCTTAGAGACATAGGAGAATACAAGAACTTCATCC 778
| || |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 719 CTTACGGAGCTGTGATGGGGACTTCTCTTAGAGACATAGGAGAGTACAAGAACTTCATCC 778
Query 779 ATATCACTCGAACCTCCATTGATGTTAGCCGTTTATCCGATTGCTCCACTTCTCTTGTCA 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATATCACTCGAACCTCCATTGATGTTAGCCGTTTATCCGATTGCTCCACTTCTCTTGTCA 838
Query 839 ATTTGAGGGTTTTGAAGGAGAAGTTGAGCAAAGTGGATTTGAGTTTCTTGAACCACAAGA 898
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 839 ATTTGAGGGTTTTGAAGGAGAAGTTGAGCAAAGTCGATTTGAGTTTCTTGAACCACAAGA 898
Query 899 AAAAGATGGCATTCTGGATCAATACCTACAACGCCTGCGTTATGAATGGATTTTTGGAAC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAAAGATGGCATTCTGGATCAATACCTACAACGCCTGCGTTATGAATGGATTTTTGGAAC 958
Query 959 ACGGACTACCTTCATCAAAGGAAAAACTGCTGACCATTCTCAAAATGGCAACAATTGACG 1018
||||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||||
Sbjct 959 ACGGACTACCTTCATCAAAAGAGAAACTACTGACTATTCTGAAAATGGCAACAATTGACG 1018
Query 1019 TGGGAGGTACACAACTGTCTGCTCTAGATATCGAAGGATCCATCTTGCAGAGTCCATGCG 1078
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1019 TGGGAGGTACTCAACTGTCTGCTCTAGATATCGAAGGATCCATCTTGCTGAGTCCATGCG 1078
Query 1079 AACCTAGGGAATCTGTTTCAGCCGGTGAAAGCGAAGTGAGAATACAGACA-CGCTACGGA 1137
||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 1079 AACCTAGGGAATCTGTTTCAGCCGGTGAAAGCGAAGTAAGAATACAG-CAACGCTACGGA 1137
Query 1138 TTCAGATGCGTAGAGCCAAACCTAATGTTCGTGCTTTGTCGTGGAGATTGGTCTTCACCT 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1138 TTCAGATGCGTAGAGCCAAACCTAATGTTCGTGCTTTGTCGTGGAGATTGGTCCTCACCT 1197
Query 1198 GCATTGAGAGTTTATACAGCAGAAGATGTGGTGAACGAACTAATCAAAGCAAGAACAGAG 1257
|| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1198 GCTTTGAGAGTCTATACAGCAGAAGATGTTGTGAACGAACTAATCAAAGCAAGAACAGAG 1257
Query 1258 TATCTAGAAGCTTCCATCGGTGTCTCGGGAAGGAAAAAGATTGTGATTCCGCGATTCTTG 1317
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1258 TATCTAGAAGCTTCCATCGGTGTATCGGGAAGGAAAAAGATTGTGATTCCGCGATTCCTG 1317
Query 1318 CATAAACGTCTACGGGATTTCGCTGAGGATGAAGGCTCGTTAATTGAATGGATATGCAGC 1377
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1318 CACAAACGTCTACGGGATTTCGCTGAGGATGAAGGGTCGTTAATTGAATGGATATGCAGC 1377
Query 1378 CAATTACCACCAGCCCAACGTTGCTTTCAGCTCAAGGAAACAGCGATGGAGGGGTTGAAC 1437
||||||||||||| |||||||||||| |||||||||||||||||| | ||| ||||||||
Sbjct 1378 CAATTACCACCAGTCCAACGTTGCTTGCAGCTCAAGGAAACAGCGGTCGAGTGGTTGAAC 1437
Query 1438 AAGAAAAGTGAATCTCAATTGAAAAAACTGATAGAAGTGAGGTCTCACGAATACGAGTTT 1497
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1438 AAGAAAGGTGAATCTCAATTGAAAAAAATGATAGAAGTGAGGTCTCACGAATACGAGTTT 1497
Query 1498 CGTTATCTCTTGGCATTGTAAAATCTAATCCTTCAA 1533
|||||||||||| | |||||||||||||||||||||
Sbjct 1498 CGTTATCTCTTGCCTTTGTAAAATCTAATCCTTCAA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5