BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT3G12545.1

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg478610 jgi|Araly1|478610|fgenesh2_kg.3__1311__AT3G12545.1         204    4e-52


> Ahg478610 jgi|Araly1|478610|fgenesh2_kg.3__1311__AT3G12545.1
Length=408

 Score =  204 bits (110),  Expect = 4e-52
 Identities = 124/131 (95%), Gaps = 0/131 (0%)
 Strand=Plus/Plus

Query  241  ACCAAATTGCCGAGTTACTGTTGTGGAAGAATGGTAAAGCCACAACCATGTGCCTGCAAG  300
            |||||| ||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct  277  ACCAAACTGCCGAGTTACTGTTGTGGAAGACTGGTAAAGCCACAACCATGTGCTTGTAAG  336

Query  301  TATTTTATCAAGAACCCTGTGCTCTTGCCCAGACTTCTAATTGCTTGTCGTGTTCCTCAT  360
            |||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  337  TATTTTATTAAGAACCCTGTCCTCTTGCCCAGACTTCTCATTGCTTGTCGTGTTCCTCAT  396

Query  361  CCTAAGTGTTA  371
            |||||||||||
Sbjct  397  CCTAAGTGTTA  407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13278144972


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5