BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12550.1
Length=2491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg318024 jgi|Araly1|318024|fgenesh1_pm.C_scaffold_3001040 3000 0.0
> Ahg318024 jgi|Araly1|318024|fgenesh1_pm.C_scaffold_3001040
Length=1956
Score = 3000 bits (1624), Expect = 0.0
Identities = 1843/1950 (95%), Gaps = 10/1950 (1%)
Strand=Plus/Plus
Query 252 GCTCGTAGATGTAAAACAATAAC-GCGAGGCGGTGATGAACAACAAATTGAGTGATTTTG 310
|||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||
Sbjct 6 GCTCGTAGATGTAAAACAATCACTG-GAGGCGGTGATGAACAACAAATTGAGTGATTTTG 64
Query 311 AGAAAAATCTGTACAAAAAACTCAAGAGTGGAAAGCTCGAGGTGAAAGTCTCATACCGGA 370
|||||| | ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 65 AGAAAAGTTTGTACAAAAAACTCAAGAGTGGAAAGCTCGAGGTGAAAGTCTCCTACCGGA 124
Query 371 CTTTCCTGTGTCCTTATTGTCCCGATAATAAGAAGAAGGTTGGTTTGTATGTTGACATTC 430
||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 125 CTTTCCTCTGTCCCTATTGCCCCGATAACAAGAAGAAGGTTGGTTTGTATGTTGACATCC 184
Query 431 TTCAGCATGCTTCTGGAGTTGGTAATAGCCAATCCAAGAAAAGAAGTTTGACTGAGAAGG 490
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 185 TTCAACATGCTTCTGGAGTTGGTAATAGCAAATCCAAGAAAAGAAGTTTGACTGAGAAGG 244
Query 491 CTAGTCACCGTGCTCTTGCCAAATACCTTATTAAAGATCTTGCTCATTACGCTACTTCTA 550
| || |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 245 CAAGCCACCGTGCTCTTGCCAAATACCTTATTAAAGATCTTGCACATTACGCTACAAGTA 304
Query 551 CTATATCTAAGCGCTTAAAAGCCAGAACATCATTCATTCCTGCTGAAACCGGCGATGCTC 610
| |||||||||||||||||||||||||||||| ||| |||||||||| ||||||| |||
Sbjct 305 CAATATCTAAGCGCTTAAAAGCCAGAACATCACTCACTCCTGCTGAAGGCGGCGATACTC 364
Query 611 CTATAATTTATGATGATGCTCAGTTCGAGAAACTTGTGTGGCCTTGGAAAGGAGTTTTGG 670
|| || |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||
Sbjct 365 CTCTAGTTTATGATGATGATCAATTCGAGAAACTTGTGTGGCCTTGGAAAGGCGTTTTGG 424
Query 671 TTAATATTCCCACGACGAGTACAGAAGATGGTCGGTCTTGTACTGGAGAGAGTGGACCAA 730
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 425 TTAATATTCCCACGACGATTACACAAGATGGTCGGTCTTGTACTGGAGAGAGTGGTCCAA 484
Query 731 AACTTAAG-GATGAATTAATCCGAAGAGGATTCAACCCAATTAGAGTTCGTACTGTGTGG 789
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AACTT-AGAGATGAATTAATCCGAAGAGGATTCAACCCAATTAGAGTTCGTACTGTGTGG 543
Query 790 GACCGTTTCGGTCATTCGGGAACCGGAATAGTGGAATTTAACAGAGACTGGAATGGACTT 849
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 544 GATCGTTTCGGTCATTCAGGAACCGGAATAGTGGAATTTAACAGAGATTGGAACGGACTT 603
Query 850 CAAGATGCTTTGGTGTTTAAGAAGGCTTATGAAGGAGATGGGCATGGGAAAAAGGATTGG 909
|| |||||||||||||| |||||||| ||||||| |||||| ||||||||||||||||||
Sbjct 604 CACGATGCTTTGGTGTTCAAGAAGGCCTATGAAGCAGATGGTCATGGGAAAAAGGATTGG 663
Query 910 CTTTGTGGTGCTACTGACTCGAGCCTTTATGCATGGCTTGCCAATGCTGATGATTACTAC 969
|| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 664 CTGTGTGGTGCTACCGACTCGAGACTTTATGCATGGCTTGCCAATGCTGATGATTACTAT 723
Query 970 AGGGCTAACAT-TTTAGGAGAAAACTTGCGGAAGATGGGTGACCTCAAAAGTATTTATAG 1028
||||||||| | |||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 724 AGGGCTAAC-TATTTAGGAGAAAAATTGCGGAAGATGGGTGACCTCAAAAGTATTTCTAG 782
Query 1029 GTTTGCAGAAGAAGAGGCAAGGAAAGACCAAAAGCTTTTGCAGCGTCTGAACTTTATGGT 1088
|||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 783 GTTTGCTGAAGAAGAGGCAAGGAAAGACCAAAAGCTTTTGCAGCGTCTGAACGTAATGGT 842
Query 1089 TGAGAACAAACAATATCGGTTGAAGAAATTACAGATAAAATATTCACAGGATTCAGTTAA 1148
||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||
Sbjct 843 TGAGACCAAACAAAATCGGTTGAAGAAGTTAGAGATAAAATATTCACAGGATTCAATTCG 902
Query 1149 ACTTAAGTATGAGACTGAAGAAAAAGAAAAGATTCTCC-GTGCTTACAGTGAAGATCTGA 1207
|||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||
Sbjct 903 ACTTAAGTATGAGACTCAAGAAAAAGAAAAGATTCTCCATTG-TTACAATGAAGATCTGA 961
Query 1208 CAGGAAGACAACAAAAATCGACTGATCATTTCAATAGGATCTTTGCTGATCATGAAAAGC 1267
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 962 CAGGAAGACAACAAAAATCGACTGATCACTTCAATAGGATTTTTGCTGATCATGAAAAGC 1021
Query 1268 AAAAGGTGCAGCTGGAGTCTCAGATAAAGGAACTTGAAATTAGA-AAGTTGGAGTTGGCA 1326
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1022 AAAAGGTGCAGCTGGAGTCTCAGATAAAGGAACTTGAAATTAGAGAA-TTGGAGTTGGCA 1080
Query 1327 AAACGTGAGGCAGAGAATGAAACGCAGAGGAAAATAGTGGCAAAAGAACTTGAACAGAAT 1386
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1081 AAACGTGAGGCAGAGAATGAAACACAGAGGAAAATAGTGGCAAAAGAGCTTGAACAGAAT 1140
Query 1387 GCTGCTATAAATAGTTATGTTCAACTATCTGCCTTGGAACAACAAAAGACCAGAGAGAAA 1446
||||||||| |||||| | || |||| ||||| ||||||||||||||||||||||||||
Sbjct 1141 GCTGCTATATTTAGTTACGCTCGACTAGCTGCCGTGGAACAACAAAAGACCAGAGAGAAA 1200
Query 1447 GCGCAAAGATTGGCTGTAGATCACAAGATGCAAAAGGAAAAGCTTCATAAGAGAATTGCT 1506
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GTGCAAAGATTGGCTGTAGATCACAAGATGCAAAAGGAAAAGCTTCATAAGAGAATTGCT 1260
Query 1507 GCACTAGAAAGGCAGCTTGATCAGAAGCAGGAGCTTGAACTGGAGGTCCAGCAACTGAAA 1566
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1261 GCACTAGAAAGGCAGCTTGATCAGAAGCAGGAGCTTGAACTGGAGGTCGAGCAACTGAAA 1320
Query 1567 AGTCAGCTGAGCGTGATGAGACTCGTGGAATTGGACAGTGGTTCTGAAATTGTGAACAAG 1626
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1321 AGACAGCTGAGCGTGATGAGACACGTGGAATTGGACAGTGGTTCTGAAATTGTGAACAAG 1380
Query 1627 GTGGAGACCTTCCTCAGAGACCTTAGTGAGACAGAAGGAGAGCTTGCACACTTAAATCAA 1686
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1381 GTGGAGACCTTCCTCAGAGACCTTAGTGAGACGGAAGGAGAGCTTGCACACTTAAATAAA 1440
Query 1687 TTCAATCAAGATCTTGTTGTTCAAGAGCGGAAGAGCAATGATGAACTTCAAGAAGCTCGA 1746
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1441 TTTAATCAAGATCTTGTTGTTCAAGAGCGGAAGAGCAATGATGAGCTTCAAGAAGCTCGA 1500
Query 1747 AGAGCATTGATAAGCAATTTGAGAGACATGGGATTGCATATTGGTGTTAAGAGAATGGGG 1806
|||||||||||||| |||||||| |||||| ||| |||||||||||||| ||||||||||
Sbjct 1501 AGAGCATTGATAAGTAATTTGAGGGACATGAGATCGCATATTGGTGTTAGGAGAATGGGG 1560
Query 1807 GAGCTTGACACCAAACCGTTTATGAAAGCAATGAGAATAAAGTACTGTCAAGAAGATCTA 1866
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||
Sbjct 1561 GAGCTTGACACCAAACCGTTTATGGAAGCAATGAGAAAAAAGTACTGTCAAGAAGATTTA 1620
Query 1867 GAGGATTGGGCAGTTGAAGTTATCCAGCTTTGGGAGGAATATCTTAAGGACCCAGATTGG 1926
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1621 GAGGATTGGGCAGTTGAAGTTATCCAGCTCTGGGAGGAATATCTTAAGGACCCAGATTGG 1680
Query 1927 CATCCTTTTAAACGGATAAAGCTTGAGACTGCAGAAACAATAGTGGAAGTAATTGATGAG 1986
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1681 CATCCTTTTAAACGGATAAAGCTTGAGACTGCAGAAACAGTAGTGGAAGTAATAGATGAG 1740
Query 1987 GATGACGAGAAGTTAAGAACCCTGAAGAATGAACTGGGGGATGATGCGTACCAAGCAGTG 2046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 GATGACGAGAAGTTAAGAACCCTGAAGAATGAACTGGGGGATGATGCGTACCAAGCAGTG 1800
Query 2047 GCAAATGCATTGCTGGAGATAAACGAGTATAATCCGAGTGGAAGGTACATCTCCTCAGAG 2106
||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1801 GCAAATGCATTGCTGGAAATAAACGAATATAATCCAAGTGGAAGGTACATCTCCTCAGAG 1860
Query 2107 CTATGGAACTTCAGAGAAGACAGGAAGGCTACGCTTGAGGAAGGTGTTAATTCTCTACTG 2166
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1861 CTATGGAACTTTAGAGAAGACAGGAAGGCTACGCTTGAGGAAGGTGTTACTTGTCTACTG 1920
Query 2167 GAGCAATGGAATCAAGCGAAGCATCTCAAG 2196
|||||||||||||| |||||||||| ||||
Sbjct 1921 GAGCAATGGAATCAGGCGAAGCATCACAAG 1950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93892453925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5