BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12560.1
Length=2436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478612 jgi|Araly1|478612|fgenesh2_kg.3__1313__AT3G12560.1 3247 0.0
> Ahg478612 jgi|Araly1|478612|fgenesh2_kg.3__1313__AT3G12560.1
Length=2376
Score = 3247 bits (1758), Expect = 0.0
Identities = 2191/2386 (92%), Gaps = 85/2386 (4%)
Strand=Plus/Plus
Query 1 ACGTCATCTTCCTTCTTTCTTTTCTAAAGACAACGACGGATTCTTACCGCAACACACACa 60
||||| |||||||||| |||||||||| |||||||||||||||||||||||||| | | |
Sbjct 1 ACGTCTTCTTCCTTCTCTCTTTTCTAAGGACAACGACGGATTCTTACCGCAACA-A-A-A 57
Query 61 aaaaaaaaaTAACTCGAGAATTCTTCATTTCTTTTAAATCTTAGAATCTCGAGTTTTTGT 120
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||
Sbjct 58 AAAAAAAAATAACTCGAGAATTCTTCATTTC-TTTAAATCTCAGAATCTCGAGTTTCTGT 116
Query 121 ATAAATCGATTCTAATTTTTCCTTTGTACATTGTTTTATATATACATAA-AACACACAAA 179
||| || ||| ||||||| | |||||||||||| ||||| ||| | || || | ||||
Sbjct 117 ATAGATAGATGCTAATTTGT-CTTTGTACATTG--TTATACATA-A-AACAAAATTCAAA 171
Query 180 TCGGGTATGGGGGAATTTGGGTTTTAAGATAGCGTGATCTGTAATAATAAGTGGTTCGCG 239
|||||||||||| |||||||||||| || | ||||||||||||||||||||||||| ||
Sbjct 172 TCGGGTATGGGGAAATTTGGGTTTT-AGTTTGCGTGATCTGTAATAATAAGTGGTT--CG 228
Query 240 ATCGTGATCAAG-AAACTGGTGGCTGATAGTGATATGCATATTTGAGAGATGGTGTTCAA 298
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 229 --C--GATCAAGAAAACTGGTGGCTGATAGTGATATGCATATTTGAGAGATGGTGTTCAA 284
Query 299 GAGAAAGTTAGATTGCCTTTCCGTGGGATTTGATTTTCCCAACATTCCCAGAGCTCCTCG 358
||| ||||||||||| || | |||||||||||||| |||||||| ||||||||
Sbjct 285 GAGGAAGTTAGATTG-----CC----GCTTTGATTTTCCCAATATTCCCAGGGCTCCTCG 335
Query 359 TTCATGCAGGAGGAAGGTTC-TAAACAAGAGGATTGATCATGATGATGATAACACTCAGA 417
||||||||||||||||| || ||||||||||||||| ||||||| ||| |||||||||
Sbjct 336 TTCATGCAGGAGGAAGG-TCATAAACAAGAGGATTG---ATGATGACGATGACACTCAGA 391
Query 418 TCTGTGCAATTGACTTACTAGCTTTGGCTGGAAAGATTCTACAGGAAAGCGAGAGTTCCT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 TCTGTGCAATTGACTTACTAGCTTTGGCTGGAAAGATTCTACAGGAAAGCGAGAGTTCCT 451
Query 478 CTGCGTCTTCTAATGCATTTGAA--G-A-AAT-----T-AAG--------CAAGAGAAAG 519
| || || || |||||||||||| | | ||| | ||| |||||| |||
Sbjct 452 CCGCCTCGTCCAATGCATTTGAAGGGAATAATCACGATAAAGAAATTAAACAAGAGCAAG 511
Query 520 TA-GA-AAATTGCAAGACTATTAAATCTGAGTCTTCTGACCAAGGAAACTCTGTGTCAAA 577
| || ||| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 512 -ATGATAAA-TGCAAGCCTGTTAAATCTGAGTCTTCTGACCAAGGAAACTCTGTGTCAAA 569
Query 578 GCCTACTTATGATATCTCTACTGAGAAGTGTGTGGTGAACAGTTGTTTTTCATTTCCGGA 637
|||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||||
Sbjct 570 GCCTACTTATGAAATCTCTGCTGACAAGTGTGTGGTGAACA---GTTTTTCATTTCCGGA 626
Query 638 TAGTGACGGCGTTTTGGAGCGGACTCCGATGTCTGATTACAAGAAGATTCATGGTTTGAT 697
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 627 TAGTGACGGCGTTTTGGAGCGAACTCCGATGTCTGACTACAAGAAGATTCATGGTTTGAT 686
Query 698 GGATGTAGGGTGTGAAAACAAGAATGTAAATAATGGGTTCGAGCAAGGAGAAGCAACCGA 757
||| | || ||| | ||||| |||| |||||| || ||||||||||| || ||
Sbjct 687 GGA--CACGG-GTG---ATGTTAATGTGAATACTGGGTTTGAACAAGGAGAAGCTACTGA 740
Query 758 TCGCGTGGGTGATGGAGGCTTAGTCACTGATACTTGCAACTTAGAGGATGCAACTGCGTT 817
| || |||| |||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 741 TTGCTTGGGAGATGGAGGCTTAATCACTGACACTTGCAACTTAGAGGATGCAACTGCGTT 800
Query 818 AGGTCTGCAGTTTCCGAAATCAGTCTGTGTGGGTGGTGATTTAAAATCACCATCCACCTT 877
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 801 AGGTGTGCAGTTTCCGAAATCAGTCTGTGTGGGTGGTGATCTAAAATCACCATCCAGCTT 860
Query 878 GGATATGACCCCTAATGGTTCCTATGCTAGACATGGGAACCATACTAACCTAGGTAGAAA 937
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 861 GGATATGACCCCTAATGGTTCCTATGCTAGACATGGGAATCATACTAACCTAGGTAGAAG 920
Query 938 AGATGATGATGAAAAATTCTATAGTTACCAT-AAACTTAGCAATAAATTTAAGTCGTATA 996
||||||||||||||| || |||||||||| | ||| ||||||||||||||||||||||||
Sbjct 921 AGATGATGATGAAAATTTTTATAGTTACC-TGAAAGTTAGCAATAAATTTAAGTCGTATA 979
Query 997 GGTCTCCAACAATTCGAAGAATAAGAAAGTC-CATGTCGTCCAAATACTGGAAACAAGTT 1055
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 980 GGTCTCCAACAATTCGAAGAATAAGAAAGTCGC-TGTCGTCCAAATACTGGAAACAAGTT 1038
Query 1056 CCAAAAGATTTTGGATACAGTAGAGCTGATGTGGGTGTGAAGACTCTTTATCGCAAAAGA 1115
|| |||||||||||| |||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1039 CCCAAAGATTTTGGACACAGTAGAGCTGATGTCGGTGTAAAGACTCTCTATCGCAAAAGA 1098
Query 1116 AAATCATGTTATGGTTACAACGCATGGCAGCGTGAGATCATTTATAAGAGAAG-AAGATC 1174
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| ||
Sbjct 1099 AAATCATGTTATGGATACAATGCATGGCAGCGTGAGATCATTTATAAGAGAAGAAAG-TC 1157
Query 1175 ACCTGACAGAAGCTCGGTCGTAACTTCTGATGGAGGACTCAGTAGTGGAAGTGTTTCCAA 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158 ACCTGACAGAAGCTCGGTCGTAACTTCTGATGGAGGACTCAGTAGTGGAAGTGTTTCCAA 1217
Query 1235 GTTACCCAAGAAGGGAGATACAGTAAAGCTAAGCATTAAGTCCTTTAGGATTCCAGAGCT 1294
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 GGTACCCGAGAAGGGAGATACAGTAAAGCTAAGCATTAAGTCCTTTAGGATTCCAGAGCT 1277
Query 1295 TTTTATTGAAGTTCCAGAAACTGCAACAGTAGGATCACTAAAGAGGACTGTGATGGAGGC 1354
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1278 TTTTATTGAAGTTCCAGAAACTGCAACAGTAGGATCACTAAAGAGGACGGTGATGGAGGC 1337
Query 1355 TGTCAGTGTTTTACTCAGCGGAGGAATACGTGTTGGGGTGTTAATGCATGGGAAGAAGGT 1414
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1338 TGTCAGTGTTTTACTCAGCGGAGGAATACGTGTTGGGGTATTAATGCATGGGAAGAAGGT 1397
Query 1415 TAGAGATGAAAGGAAAACTCTGTCCCAGACTGGGATCTCATGTGATGAAAATCTAGACAA 1474
||||||||| |||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 1398 TAGAGATGACAGGAAAACTCTGTCACAGACTGGGATCTCATGTGATGAAATTTTAGACAA 1457
Query 1475 CCTTGGGTTCACCTTGGAGCCTAGTCCCAGCAAAGTTCCCCTACCTTTGTGTTCTGAAGA 1534
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1458 CCTTGGGTTCACCTTGGAGCCTGGTCCCAGCAAAGTTCCCCTACCTTTGTGTTCCGAAGA 1517
Query 1535 TCCTGCTGTGCCAACCGACCCTACAAGTTTGTCTGAACGGTCTGCGGCGTCTCCTATGCT 1594
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
Sbjct 1518 TCCTGCTGTGCCAACCGACCCTACGAGTTTGTCTGAACGGTCTGCGGCGTCTCCCATGTT 1577
Query 1595 AGATTCTGGAATTCCACATGCAGATGACGTGATTGATTCAAGAAATATTGTGGACAGTAA 1654
||||||||||||||| |||||||| ||||||||| ||| | |||||||||||||||||||
Sbjct 1578 AGATTCTGGAATTCCCCATGCAGAGGACGTGATTAATTTAGGAAATATTGTGGACAGTAA 1637
Query 1655 CCTCGAATTAGTTCCATATCAGGGTGACATATCTGTTGATGAACCTTCATCAGATTCAAA 1714
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1638 CCTCGAATTAGTTCCATATCAGGGGGACATATCTGTTGATGAACCTTCATCGGATTCAAA 1697
Query 1715 AGAGCTTGTCCCACTTCCAGAGTTGGAAGTCAAGGCGCTTGCCATAGTTCCGTTGAACCA 1774
||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1698 AGAGCTTGTTCCACTTCCAGCCTTGGAAGTTAAGGCGCTTGCCATAGTTCCGTTGAACCA 1757
Query 1775 GAAACCTAAGCGTACTGAGCTAGCCCAGAGGAGAACTAGGAGACCCTTCTCTGTGACAGA 1834
||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||||
Sbjct 1758 GAAACCTAAGCGTACTGAGCTTGCCCAGCGCAGAACCAGGAGACCCTTCTCTGTGACAGA 1817
Query 1835 GGTAGAAGCTCTTGTACAAGCAGTTGAGGAACTCGGGACTGGAAGATGGCGTGATGTAAA 1894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1818 GGTAGAAGCTCTTGTACAAGCAGTTGAGGAACTCGGGACTGGAAGATGGCGTGATGTGAA 1877
Query 1895 ATTGCGTGCTTTCGAGGATGCAGATCATCGGACTTACGTGGACTTGAAGGACAAATGGAA 1954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 ATTGCGTGCTTTCGAGGATGCAGATCATCGGACTTACGTGGACTTGAAGGACAAATGGAA 1937
Query 1955 GACGCTAGTTCACACAGCAAGTATATCCCCACAGCAACGAAGAGGAGAGCCGGTGCCACA 2014
|||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1938 GACGCTTGTTCACACAGCAAGTATATCACCGCAGCAACGAAGAGGAGAGCCTGTGCCACA 1997
Query 2015 AGAACTGCTAGACAGAGTCTTGAGGGCATACGGGTATTGGTCGCAGCACCAAGGAAAACA 2074
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 AGAACTCCTAGACAGAGTCTTGAGGGCATACGGGTATTGGTCGCAGCACCAAGGAAAACA 2057
Query 2075 TCAGGCGAGAGGAGCGTCCAAAGATCCAGACATGAACAGAGGTGGAGCTTTTGAATCAGG 2134
||||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 2058 TCAGGCGAGAGGAGCATCCAAAGATCCAGAGATGAACAGAGGTAGAGCTCTTGAATCAGG 2117
Query 2135 TGTTTCAGTGTAAAAAA-GGAGGTACGCATTGGTGGGTGGGTGTACAGAAGCAAACAACA 2193
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2118 TGTTTCAGTGTAAAAAAAGGAGGTACGCATTGGTGGGTGGGTGTACAGAAGCAAACAACA 2177
Query 2194 CAATAAATGGACAACTCAATTTCTGCAAAGTTTAATTGTCTTTATTTCTCGttttttttt 2253
|||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2178 CAATAAATCGAAAACTCAATTTCTGCAAAGATTAATTGTCTTTATTTCTCGTTTTTTTTT 2237
Query 2254 ttCTCCTACATACACtttttttttCCTTGCTTTGGCATCTGTAAATGACTCCAACTGGGA 2313
|| | | | || || | | ||||||||||||||||||||||||||||||||
Sbjct 2238 TTTTT-T---T-CA-TT-------C-T-GCTTTGGCATCTGTAAATGACTCCAACTGGGA 2282
Query 2314 TGAGATTCGTCCCTAACCAAATTTTTAGGTTCTATCTTTGTTTTTT 2359
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2283 TGAGATTCGTCCCTAACCAAATTTTTAGGTTCTATCTTTTTTTTTT 2328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91797490450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5