BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12570.1
Length=1748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478613 jgi|Araly1|478613|fgenesh2_kg.3__1314__AT3G12570.2 2536 0.0
> Ahg478613 jgi|Araly1|478613|fgenesh2_kg.3__1314__AT3G12570.2
Length=1929
Score = 2536 bits (1373), Expect = 0.0
Identities = 1459/1502 (97%), Gaps = 0/1502 (0%)
Strand=Plus/Plus
Query 93 TGGAAGAAATATGGGTGAGACTCTCATCACCACCCTGTCTATGGAGAACTATCACCCGTC 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 TGGAAGAAATATGGGTGAGACTCTCATCACCACCCTGTCTATGGAGAACTATCACCCGTC 432
Query 153 AACACTGCTATCCATGGATTCAGGTGCTTTTACTCATGAAGAATCAGAGAGGGATATGAA 212
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 433 AACACTACTATCCATGGATTCAGGTGCTTTTACTCATGAAGAATCTGAGAGGGATATAAA 492
Query 213 TGGGTCTCTCATACTTACTGGACCGCCTGATATTAATCTACCACTCTCTTCTGAAGCTAG 272
| |||| ||| |||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 493 TCGGTCGCTCCTACTTACTGGACCGCCTGATATTAATCTCCCACTCTCATCTGAAGCAAG 552
Query 273 GCCATCTCTGCTTTTGTGGAACGAACACTGTGACATCTTAGACGTTGGACTTGGACCTCA 332
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 553 CCCATCTCTGCTTTTGTGGAACGAACACTGTGACATCTTAGACGTTGGACTCGGCCCTCA 612
Query 333 GCTATATGAGCCTGAGGCTGTTGTTCATGTGCCTAAGGTTGCTAAGAAGTACAACAAGCG 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GCTATATGAGCCTGAGGCTGTTGTTCATGTGCCTAAGGTTGCTAAGAAGTACAACAAGCG 672
Query 393 TGTTGATAGTGCATGGGGTGCTTGGCTTTTCTTCAGTTTCTACTTCAAACCTGTTTTGGA 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TGTTGATAGTGCATGGGGTGCTTGGCTTTTCTTCAGTTTCTACTTCAAACCTGTTTTGGA 732
Query 453 TGAGAAGTCTAAAAGTAAGTTAACGAGGGACAGCAATGGCTTGTCTGGGTATGATAAATC 512
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 733 TGAGAAGTCCAAAAGTAAGTTAACGAGGGACAGCAATGGCTTGTCCGGGTATGATAAATC 792
Query 513 TGATTTGCAGCTCGACTCGTTCTTGGTTCAGCATGACATGGAGAATATGTACATGTGGGT 572
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGATTTGCAGCTCGACTCCTTCTTGGTTCAGCATGACATGGAGAATATGTACATGTGGGT 852
Query 573 GTTCAAGGAAAAGCCTGAAAATGCCCTTGGCAAGATGCAGCTGCGGAGCTACATGAACGG 632
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 853 GTTCAAGGAAAAGCCTGAAAATGCCCTTGGCAAGATGCAGCTGAGGAGTTACATGAACGG 912
Query 633 ACACTCACGCGAGGGTGAGCGTCCTTTCCCTTTTAGTGTGGACAAAGGTTTTGTCCGCTC 692
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 ACACTCACGTGAGGGTGAGCGTCCTTTCCCTTTTAGTGTGGACAAAGGTTTTGTCCGCTC 972
Query 693 TCATAGGATGCAGAGGAAACATTACCGTGGTCTCTCTAACCCACAGTGCCTCCATGGAAT 752
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 973 TCATAGGATGCAGAGGAAACATTATCGTGGTCTCTCTAATCCACAGTGCCTCCATGGAAT 1032
Query 753 CGAAGTTGTTTATTCACCCAACCTTTCTGTACTCAGCGAGGATGAAAAGAAGAAGTGGAC 812
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1033 CGAGGTTGTTTATTCACCCAACCTTTCTGTACTCAACGAGGATGAAAAGAAGAAGTGGAC 1092
Query 813 AGAACTCACAGGTCGAGATGTGAACTTTGCTATTCCAGCTGAAGCTAGTGATTACGGTTC 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 AGAACTCACAGGTCGAGATGTGAACTTTGCTATTCCAGCTGAAGCTAGTGATTACGGTTC 1152
Query 873 ATGGAGGAATCTCCCAAACACCGAATTTGAGGCTGAGAGACCTCTTCCTCTGGCTAAAGC 932
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1153 ATGGAGGAGTCTCCCAAACACCGAATTTGAGGCTGAGCGACCTCTTCCTCTGGCTAAAGC 1212
Query 933 TAACGGGCACACCCACCTGAAAAAGCTGAATGGTACCTGTCTAAACCTGTCTACACATTC 992
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1213 TAACGGGCACACCCACCTGAAAAAGCTGAACGGTACCTGTCTGAACCTGTCTACACATTC 1272
Query 993 CCCAGACCATGCAGTTGATACAGTGGAAGTTCAACTCGCTGGTAGCAATAAACGCAAAAG 1052
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1273 CCCAGACCATGCAGTTGATACAGTGGAAGTTCAACCCGCTGGTAGCAATAAACGCAAAAG 1332
Query 1053 GGATTGTCTTGCTCTAGGAAACTGCGATGACTCGAGCTCAAGTGAGAAATCTCTGGACAT 1112
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1333 GGATTGTCTTGCTCTAGGAAACTGTGATGACTCGAGCTCAAGTGAGAAATCTCTGGACAT 1392
Query 1113 GAAAATCCATGCAACGGAGCTGCCTTGGTCAAATGATTTTAGCGGGGTGATGAAGAATGT 1172
||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||
Sbjct 1393 GAAAATCCATGCAACAGAGCTACCTTGGTCAAATGATTTCAGTGGGGTGATGAAGAATGT 1452
Query 1173 GTACGGTCCAGTCACAGCCGCAAAAACGATATATGAAGACGACAGAGGGTTCTTGATAGT 1232
||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||
Sbjct 1453 GTACGGTCCAGTCACAGCCACAAAAACAATATATGAAGACGACAAAGGGTTCTTGATAGT 1512
Query 1233 TATGAGCCTGCCATTTGTTGATTCCGGAAGGGTGAAAGTGACATGGAGGAATACACCAGC 1292
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1513 TATGAGCCTGCCGTTTGTTGATTCGGGAAGGGTGAAAGTGACATGGAGGAATACACCAAC 1572
Query 1293 ACATGGAATAGTGAAGATATCATGTGTAAGTACAGCATGTGAGCCATTCATCAAGAGACA 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 ACATGGAATAGTGAAGATATCATGTGTAAGTACAGCATGTGAGCCATTCATCAAGAGACA 1632
Query 1353 TGATAGAACATTTAAGCTAACAGATCCAACACCAGAGCATTGCCCACCGGGGGAATTTGT 1412
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1633 TGATAGAACATTTAAGCTAACAGATTCAACACCAGAGCATTGCCCACCGGGAGAATTTGT 1692
Query 1413 CCGCGAAGTCTCCCTGCCGAACAGGATTCCAGATGACGCCAAGCTTGAAGCTTACCGGGA 1472
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1693 CCGCGAAGTCTCCCTGCCGAACAGGATTCCAGATGACGCGACGCTTGAAGCTTACCGGGA 1752
Query 1473 CGAAACAGGAACAACACTAGAGGTTTTAGTGCCTAAACACCGAATGGGACCAGAGGAGCA 1532
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1753 CGAAACAGGAACAACGCTAGAGGTTTTAGTGCCTAAACACCGAATGGGACCAGAGGAGCA 1812
Query 1533 TGAGGTTCGCGTCTGTCTCCGTCCGTTCGTGCTAGAGTGAGATTGTAGCGCATAACTTCT 1592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1813 TGAGGTTCGCGTCTGTCTCCGTCCGTTCGTGCTAGAGTGAGATTGTAGCGCATAACTTCT 1872
Query 1593 TA 1594
||
Sbjct 1873 TA 1874
Score = 130 bits (70), Expect = 4e-29
Identities = 77/80 (96%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 1 AAAA-TTGGGATCATTTTGATAGGAGCGACTCTGTTCCTTCGCCGCCGATACGCACTCTT 59
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 74 AAAATTTGGGATCATTTTGATAGGAGCGACTCTGTTCCTTCGCCGCCGATACTCACTCTT 133
Query 60 CTTCATCGGATTTGTTCCTC 79
|||||||||||||| |||||
Sbjct 134 CTTCATCGGATTTGATCCTC 153
Score = 82.4 bits (44), Expect = 1e-14
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1612 ATGTATCATTGGATTATTCATATTTAATCATATTTACTCCATTTCATTGTGTTCTT 1667
|||||||||||||||||||||||||||| |||||| | |||||| |||||||||||
Sbjct 1874 ATGTATCATTGGATTATTCATATTTAATAATATTTCCCCCATTTGATTGTGTTCTT 1929
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65591401890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5