BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12600.1
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478618 jgi|Araly1|478618|fgenesh2_kg.3__1319__AT3G12600.1 1391 0.0
> Ahg478618 jgi|Araly1|478618|fgenesh2_kg.3__1319__AT3G12600.1
Length=894
Score = 1391 bits (753), Expect = 0.0
Identities = 853/900 (95%), Gaps = 11/900 (1%)
Strand=Plus/Plus
Query 2 TTCTTTGTTGACCCACCCAAC--AACCaa-aaaaaaTAAATACAAATCTGTATCT-GC-G 56
||||||||||||||||||||| || || |||||| |||||||||||||||||| | |
Sbjct 1 TTCTTTGTTGACCCACCCAACAAAAAAAACAAAAAAAAAATACAAATCTGTATCTCTCAG 60
Query 57 TCTTTGATCCTAAATAGCTATAGACAGACACACCCAAACCCTAGATCTAACCCCAGCCGT 116
|||||||||||||||||| ||||| || | |||||||||||||||||||||||||||
Sbjct 61 TCTTTGATCCTAAATAGC--TAGAC--TCA-A-CCAAACCCTAGATCTAACCCCAGCCGT 114
Query 117 CAGATCAGATTGATCGGGCAATCGCTTCTAGACCGTTGGAATCAAGCAATGGTAGAGGTA 176
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 115 CAGATCAGATTGATCGGGCAATCGCTTCTAGACCGTTGGAATTAAGCAATGGTAGAGGTA 174
Query 177 GAATCGTATTTGTGGGTATCTAGAAGAGGCGTTAGGATTGTCTCCAAGCTGGGTGTTTTT 236
|||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||
Sbjct 175 GAATCGTATTTGTGGGTATCCAGAAGAGGCGTGAGGATTTTCTCGAAGCTGGGTGTTTTT 234
Query 237 TCATCTTGATGGCCAACTAATCGAATCTCCTACTCTAAAGATATTTTTGTTTATTTCTGT 296
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 235 TCATCTTGATGGCCAACAAATCGAATCTCCTCCTCTAAAGATATTTTTGTTTATTTCGGT 294
Query 297 CATGTGTGATTTGGTCGCGCGTACGGGTCGTCTCCAGCAGCGGTACGAGGATGGCTCTCG 356
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 295 GATGTGTGATTTGGTCGCGCGTACGGGTCGGCTCCAGCAGCGGTACGAGGATGGCTCTCG 354
Query 357 TCTCGTCGCCGGGTGTATTCCGTTTAGGTATGTAAATTCTGACAAAGATGGTAATTCTGA 416
|||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 355 TCTCGTAGCCGGGTGTATTCCATTTAGGTATATAAATTCTGACAAAGATGGTAATTCTGA 414
Query 417 ATCTGGGAAAGTGATTCAAGTGTTGATGATCAGCTCGTCTAGTGGACCTGGACTTTTGTT 476
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 415 ATCTGGGAAAGTGATTCAAGTGTTGATGATCAGCTCGTCTAGTGGACCGGGACTTTTGTT 474
Query 477 TCCCAAGGGAGGATGGGAGAATGATGAGACAGTCAGGGAGGCTGCAGCGAGGGAAGCAGT 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 475 TCCCAAGGGAGGATGGGAGAATGATGAGACAGTCAGGGAGGCTGCAGTGAGGGAAGCAGT 534
Query 537 GGAAGAAGCAGGAGTCCGTGGGATTCTTATGGATTTTTTGGGGAATTATGAGTTCAAGAG 596
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 535 GGAAGAAGCAGGTGTCCGTGGGATTCTAATGGATTTTTTGGGAAATTATGAGTTCAAGAG 594
Query 597 CAAATCACACCAAGATGAGTTTAGCCCAGAAGGTTTATGTAAAGCGGCAATGTACGCGTT 656
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 595 CAAAACACACCAAGATGAGTTTAGCCCAGAAGGTTTATGTAAAGCGGCAATGTACGCATT 654
Query 657 GTATGTGAAAGAAGAGCTAGCGACGTGGCCGGAACATGAGACGAGAACACGTAAATGGCT 716
||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 655 GTATGTGAAGGAAGAGCTAGAGACGTGGCCGGAACATGAGACGAGAACACGGAAATGGCT 714
Query 717 GACAATTGAAGAAGCGGTAGAGAGTTGCAGGCACCCTTGGATGAAGGACGCATTGGTGGA 776
||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||
Sbjct 715 GACAATTGAAGAAGCGGTAGAGAATTGCAGGCACGCTTGGATGAAGGATGCATTGGTGGA 774
Query 777 AGGATTCTGTAAATGGCATAAGGAGAAGATGGTTAAAGGAGAGGAGATAACTGGTGAACA 836
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 775 AGGATTCTGTAAATGGCATAAGGAGAAGATGGTTAAAGGAGAGGAGATAACAAGTGAACA 834
Query 837 TTGAAGCAAATGTGCATAAACCTCTGAGCGTTGGTTTCATTCCTTTCGAttttgttttta 896
||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 835 TTGAAGCAAGTGTGCATAAACCTCTGAGGGTTGGTTTCATTTCTTTCGATTTTGTTTTTA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38809129506
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5