BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12600.1 Length=1043 Score E Sequences producing significant alignments: (Bits) Value Ahg478618 jgi|Araly1|478618|fgenesh2_kg.3__1319__AT3G12600.1 1391 0.0 > Ahg478618 jgi|Araly1|478618|fgenesh2_kg.3__1319__AT3G12600.1 Length=894 Score = 1391 bits (753), Expect = 0.0 Identities = 853/900 (95%), Gaps = 11/900 (1%) Strand=Plus/Plus Query 2 TTCTTTGTTGACCCACCCAAC--AACCaa-aaaaaaTAAATACAAATCTGTATCT-GC-G 56 ||||||||||||||||||||| || || |||||| |||||||||||||||||| | | Sbjct 1 TTCTTTGTTGACCCACCCAACAAAAAAAACAAAAAAAAAATACAAATCTGTATCTCTCAG 60 Query 57 TCTTTGATCCTAAATAGCTATAGACAGACACACCCAAACCCTAGATCTAACCCCAGCCGT 116 |||||||||||||||||| ||||| || | ||||||||||||||||||||||||||| Sbjct 61 TCTTTGATCCTAAATAGC--TAGAC--TCA-A-CCAAACCCTAGATCTAACCCCAGCCGT 114 Query 117 CAGATCAGATTGATCGGGCAATCGCTTCTAGACCGTTGGAATCAAGCAATGGTAGAGGTA 176 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 115 CAGATCAGATTGATCGGGCAATCGCTTCTAGACCGTTGGAATTAAGCAATGGTAGAGGTA 174 Query 177 GAATCGTATTTGTGGGTATCTAGAAGAGGCGTTAGGATTGTCTCCAAGCTGGGTGTTTTT 236 |||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||| Sbjct 175 GAATCGTATTTGTGGGTATCCAGAAGAGGCGTGAGGATTTTCTCGAAGCTGGGTGTTTTT 234 Query 237 TCATCTTGATGGCCAACTAATCGAATCTCCTACTCTAAAGATATTTTTGTTTATTTCTGT 296 ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| || Sbjct 235 TCATCTTGATGGCCAACAAATCGAATCTCCTCCTCTAAAGATATTTTTGTTTATTTCGGT 294 Query 297 CATGTGTGATTTGGTCGCGCGTACGGGTCGTCTCCAGCAGCGGTACGAGGATGGCTCTCG 356 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 295 GATGTGTGATTTGGTCGCGCGTACGGGTCGGCTCCAGCAGCGGTACGAGGATGGCTCTCG 354 Query 357 TCTCGTCGCCGGGTGTATTCCGTTTAGGTATGTAAATTCTGACAAAGATGGTAATTCTGA 416 |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||| Sbjct 355 TCTCGTAGCCGGGTGTATTCCATTTAGGTATATAAATTCTGACAAAGATGGTAATTCTGA 414 Query 417 ATCTGGGAAAGTGATTCAAGTGTTGATGATCAGCTCGTCTAGTGGACCTGGACTTTTGTT 476 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 415 ATCTGGGAAAGTGATTCAAGTGTTGATGATCAGCTCGTCTAGTGGACCGGGACTTTTGTT 474 Query 477 TCCCAAGGGAGGATGGGAGAATGATGAGACAGTCAGGGAGGCTGCAGCGAGGGAAGCAGT 536 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 475 TCCCAAGGGAGGATGGGAGAATGATGAGACAGTCAGGGAGGCTGCAGTGAGGGAAGCAGT 534 Query 537 GGAAGAAGCAGGAGTCCGTGGGATTCTTATGGATTTTTTGGGGAATTATGAGTTCAAGAG 596 |||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 535 GGAAGAAGCAGGTGTCCGTGGGATTCTAATGGATTTTTTGGGAAATTATGAGTTCAAGAG 594 Query 597 CAAATCACACCAAGATGAGTTTAGCCCAGAAGGTTTATGTAAAGCGGCAATGTACGCGTT 656 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 595 CAAAACACACCAAGATGAGTTTAGCCCAGAAGGTTTATGTAAAGCGGCAATGTACGCATT 654 Query 657 GTATGTGAAAGAAGAGCTAGCGACGTGGCCGGAACATGAGACGAGAACACGTAAATGGCT 716 ||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||| Sbjct 655 GTATGTGAAGGAAGAGCTAGAGACGTGGCCGGAACATGAGACGAGAACACGGAAATGGCT 714 Query 717 GACAATTGAAGAAGCGGTAGAGAGTTGCAGGCACCCTTGGATGAAGGACGCATTGGTGGA 776 ||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||| Sbjct 715 GACAATTGAAGAAGCGGTAGAGAATTGCAGGCACGCTTGGATGAAGGATGCATTGGTGGA 774 Query 777 AGGATTCTGTAAATGGCATAAGGAGAAGATGGTTAAAGGAGAGGAGATAACTGGTGAACA 836 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 775 AGGATTCTGTAAATGGCATAAGGAGAAGATGGTTAAAGGAGAGGAGATAACAAGTGAACA 834 Query 837 TTGAAGCAAATGTGCATAAACCTCTGAGCGTTGGTTTCATTCCTTTCGAttttgttttta 896 ||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||| Sbjct 835 TTGAAGCAAGTGTGCATAAACCTCTGAGGGTTGGTTTCATTTCTTTCGATTTTGTTTTTA 894 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38809129506 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5