BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12620.1
Length=1711
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478621 jgi|Araly1|478621|fgenesh2_kg.3__1322__AT3G12620.1 2610 0.0
Ahg938434 jgi|Araly1|938434|scaffold_502625.1 553 2e-156
> Ahg478621 jgi|Araly1|478621|fgenesh2_kg.3__1322__AT3G12620.1
Length=1706
Score = 2610 bits (1413), Expect = 0.0
Identities = 1628/1726 (94%), Gaps = 38/1726 (2%)
Strand=Plus/Plus
Query 4 TAAGAGAAATCGAACCCCCAAATAAGG-AATTCTGACAGAGTCGCCTGCTAGATTTG--- 59
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 TAAGAGAAATCGAACCCCCAAATAAGGAAATTCTGACAGAGTCGCCTGCTAGATTTGTTT 60
Query 60 -TTTtctttctc--tctcgtcatctctcttcctctctGTAATCCCAACCGGAGTTACGAT 116
|||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 TTTTTTTTTCTCTTTCTCGTCATCTCTCTTCCTCTCTGTAA-CCCAACCGGAGTTACGAT 119
Query 117 TCCTTCTTATCGTAACTCCTGCTTCCGATCTCGATCCAATTTTCACTTTTGTTTTGTCCG 176
||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||
Sbjct 120 TCCCTCTTATCGTAACTCCTGCTTCCGATCTCGATCCACTTTCCAGTTTTGTTTTGT-CG 178
Query 177 AACGGTAAATCATTTCGCGGCt-ttttttt-tttAAGGGAAGGAGGAATAAGCAAATTTT 234
||||| ||||||||| ||||| ||||||| ||| |||||||||||||||||| ||
Sbjct 179 GACGGT-AATCATTTCCCGGCTCTTTTTTTGTTTTAGGGAAGGAGGAATAAGC-AA---- 232
Query 235 GATTTGATTCCGtttttttGGGGGTGTTAGTGATCTTTTAGATGAAGT-AAAGAAATTTT 293
| | | ||||||||||||||||||||||||| |||||||||| ||| ||| |||
Sbjct 233 -A----A-T---TTTTTTTGGGGGTGTTAGTGATCTTATAGATGAAGTAAAAAAAAATTT 283
Query 294 GATTATTGAGGGGATTATGTGAGTTATGGTATCATCGGCAACTATATTGCGGATGGTAGC 353
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 284 GATTATTGAGGGGATTATGTGAGTTATGGTATCATCGGCAACTATTTTGCGGATGGTAGC 343
Query 354 ACCATGTTGGAGGCGACCTTCTGTTAAAGGAGATCATTCTACTAG--A-GACGCTAATGG 410
|||||||||||||||||||||||| || ||||||||||||||||| | |||||||||||
Sbjct 344 ACCATGTTGGAGGCGACCTTCTGTCAAGGGAGATCATTCTACTAGAAATGACGCTAATGG 403
Query 411 TCGATGTGATGGTCTTCTTTGGTATAAAGATTCTGGTAACCATGTTGCTGGAGAGTTCTC 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 TCGATGTGATGGTCTTCTTTGGTATAAAGATTCTGGTAACCATGTTGCTGGAGAGTTCTC 463
Query 471 TATGTCTGTTATTCAAGCTAATAATCTTCTCGAAGATCATAGCAAGCTTGAGTCTGGACC 530
||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 464 TATGTCTGTCATTCAAGCCAATAATCTTCTTGAAGATCATAGCAAGCTTGAGTCTGGACC 523
Query 531 TGTTAGTATGTTTGATTCTGGTCCTCAAGCTACTTTTGTTGGTGTTTATGATGGTCATGG 590
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 524 CGTTAGTATGTTTGATTCTGGTCCTCAAGCTACTTTTGTTGGTGTCTATGATGGTCATGG 583
Query 591 TGGTCCTGAAGCTGCCCGTTTCGTTAATAAACACCTCTTCGACAACATCAGGAAGTTTAC 650
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 584 AGGTCCTGAAGCTGCCCGTTTTGTTAATAAACACCTCTTCGATAACATCAGGAAGTTTAC 643
Query 651 ATCAGAGAATCATGGAATGTCTGCCAATGTTATAACTAAAGCGTTTTTAGCTACGGAAGA 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 ATCAGAGAATCATGGAATGTCTGCCAATGTTATAACTAAAGCGTTTTTAGCTACGGAAGA 703
Query 711 AGATTTTCTTTCTCTTGTCCGGCGGCAGTGGCAGATTAAACCACAGATTGCTTCTGTTGG 770
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 704 AGATTTTCTTTCTCTTGTGCGGCGGCAGTGGCAGATTAAACCACAGATTGCTTCTGTTGG 763
Query 771 AGCTTGTTGTCTGGTAGGGATCATATGTAGTGGATTGTTGTATATTGCAAACGCTGGAGA 830
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 AGCATGTTGTCTGGTAGGGATCATATGTAGTGGATTGTTGTATATTGCAAACGCTGGAGA 823
Query 831 TTCTCGGGTTGTGCTAGGAAGACTGGAAAAAGCGTTTAAAATTGTCAAGGCCGTTCAGTT 890
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 824 TTCTCGGGTTGTGCTAGGAAGATTGGAAAAAGCGTTTAAAATTGTCAAGGCCGTTCAGTT 883
Query 891 ATCGTCTGAGCATAATGCAAGTCTTGAATCTGTGAGAGAGGAGTTGCGCTCGTTGCATCC 950
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 ATCGTCTGAGCACAATGCAAGTCTTGAATCTGTGAGAGAGGAGTTGCGCTCGTTGCATCC 943
Query 951 AAATGATCCTCAGATTGTGGTCTTGAAGCACAAAGTTTGGCGTGTCAAAGGTATTATACA 1010
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 944 AAATGATCCTCAGATTGTTGTCTTGAAGCACAAAGTTTGGCGAGTCAAAGGTATTATACA 1003
Query 1011 GGTTTCACGGTCGATTGGTGATGCATACTTAAAGAAAGCAGAATTCAACCGGGAACCATT 1070
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||
Sbjct 1004 GGTTTCACGGTCGATTGGTGATGCCTACTTAAAGAAAGCAGAATTCAACCAGGAACCGTT 1063
Query 1071 GTTGGCAAAGTTCAGGGTCCCTGAGGTTTTCCATAAGCCCATCCTTAGAGCAGAGCCGGC 1130
||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| ||
Sbjct 1064 GTTGGCAAAGTTCAGAGTCCCCGAGGTTTTCCATACGCCCATCCTTAGAGCAGAGCCAGC 1123
Query 1131 AATTACAGTACACAAAATCCATCCAGAAGATCAGTTTCTTATATTTGCATCAGACGGCTT 1190
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1124 AATTACAGTACACAAAATCCATCCAGAGGATCAGTTTCTGATATTTGCATCAGACGGCTT 1183
Query 1191 GTGGGAGCACTTGTCCAATCAAGAAGCTGTTGACATTGTGAACACATGCCCGCGCAATGG 1250
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1184 GTGGGAGCACTTAACCAATCAAGAAGCTGTTGACATTGTGAACACATGCCCACGCAATGG 1243
Query 1251 GATTGCAAGGAAGCTCATAAAAACAGCTCTAAGAGAGGCAGCAAAGAAGAGAGAGATGAG 1310
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 GATTGCAAGGAAGCTAATAAAAACAGCTCTAAGAGAGGCAGCAAAGAAGAGAGAGATGAG 1303
Query 1311 ATATTCGGATCTAAAAAAGATCGATAGAGGAGTGCGGAGACATTTTCATGATGATATAAC 1370
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1304 ATATTCGGATCTAAAAAAGATCGATAGAGGAGTGAGGAGACATTTTCATGATGATATAAC 1363
Query 1371 AGTCATAGTTGTGTTTCTTGATTCACATCTCGTCAGTCGCAGTACCTCACGCCGACCTCT 1430
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1364 AGTCATAGTTGTGTTTCTTGATTCACATCTCGTCAGTCGGAGTACCTCACGCCGACCTCT 1423
Query 1431 CCTCTCCATCTCAGGTGGTGGTGATTTAGCTGGACCTTCTACTTGACTCTACTCTCACCA 1490
| ||||||| |||||||||||||| || ||||||||||| ||||||||| ||||||||||
Sbjct 1424 CATCTCCATTTCAGGTGGTGGTGACTTGGCTGGACCTTCCACTTGACTCAACTCTCACCA 1483
Query 1491 CA-TCtatatatatcttatatatacattatccactatatata-A-AAACACATTGCAAAA 1547
|| ||||||||||| || |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1484 CAATCTATATATATTTTTTATATACATTATCCACTATATATATATAAACACATTGCAAAG 1543
Query 1548 CGCAATTCAAGTTCCTTCtttttttttttCTCTATATATAAAAATTTCCTCTT-AACTCT 1606
|||||||||||| ||||||| |||||| ||||||||| ||||||||||| || ||||||
Sbjct 1544 CGCAATTCAAGTCCCTTCTTATTTTTT--CTCTATATA-AAAAATTTCCTTTTTAACTCT 1600
Query 1607 GTTTTTTATTCATCCCaaaaaaaaaT-GAAGAGTTGAAATCCAATGTATAGGTCTTTTGG 1665
| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 1601 GCTTTTTATTCATCCCAAAAAAAAATTGAAGAGTTGGAATCCAATGTATAGGTCTTTTGG 1660
Query 1666 CAAACTGAGTTTATTATGGATAATATAAAGAGATATCACTTGTTGG 1711
||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 1661 CAAACTGAGTTTATTATGGATAATATAAATAGATGTCATTTGTTGG 1706
> Ahg938434 jgi|Araly1|938434|scaffold_502625.1
Length=1197
Score = 553 bits (299), Expect = 2e-156
Identities = 777/1004 (77%), Gaps = 48/1004 (5%)
Strand=Plus/Plus
Query 403 GCTAATGGTCGATGT-GATGGTCTTCTT-TGGTATAAAGATTCTGGTAACCATGTTGCTG 460
|||||||| || | | ||||||| |||| ||||| ||||||||||| ||||| | |||
Sbjct 109 GCTAATGGCCG-TCTCGATGGTC-TCTTGTGGTACAAAGATTCTGGGAACCACATCACTG 166
Query 461 GAGAGTTCTCTATGTCTGTTATTCAAGCTAATAATCTTCTCGAAGATCATAGCAAGCTT- 519
||||||| |||||| | || |||||||||| || ||||| |||||||||||| || ||
Sbjct 167 GAGAGTTTTCTATGGCAGTGGTTCAAGCTAACAACCTTCTTGAAGATCATAGCCAG-TTA 225
Query 520 GAGTCTGGACCTGTTAGTATGTTTGATTCTGGTCCTCAAGCTACTTTTGTTGGTGTTTAT 579
|| ||||| || ||||| || ||||||||| ||| | || ||||||||||||||||||
Sbjct 226 GAATCTGGTCCCATTAGTTTGCATGATTCTGGACCTGAGGCAACTTTTGTTGGTGTTTAT 285
Query 580 GATGGTCATGGTGGTCCTGAAGCTGCCCG-TTTCGTTAATAA-ACACCTCTTCGACAACA 637
||||||||||| ||||| || || || || ||| || || | | || |||| | ||||
Sbjct 286 GATGGTCATGGAGGTCCCGAGGCAGCTCGGTTT-GTAAACGATAGAC-TCTTTTATAACA 343
Query 638 TCAGGAAGTTTACATCAGAGA-ATC-ATGGAATGTCTGCCAATGTTATAACTAAAGCGTT 695
||| || || ||||||||| | | | | ||| | || || ||||||| || | || |||
Sbjct 344 TCAAGAGGTATACATCAGA-ACAGCGAGGGA-TCTCACCCGATGTTATCACCAGAGGGTT 401
Query 696 TTTAGCTACGGAAGAAGATTTTCTTTCTCTT-GTCC-GGCGGCAGTGGCAGATTAAACCA 753
| |||| || || || || ||||| | || || | || | || ||| ||| || ||
Sbjct 402 TGTAGCAACAGAGGAGGAGTTTCTCGGT-TTAGTGCAGGAG-CAATGGAAGAACAAGCCG 459
Query 754 CAGATTGCTTCTGTTGGAGCTTGTTGTCTGGTAGGG-ATCATATGTAGTGGATTGTTGTA 812
|||||||||||||| |||||||||||| |||| ||| || | |||| ||||||||||||
Sbjct 460 CAGATTGCTTCTGTGGGAGCTTGTTGTTTGGT-GGGTATTGTTTGTAATGGATTGTTGTA 518
Query 813 TATTGCAAACGCTGGAGATTCTCGGGTTGTGCTAGG-AAGACTGGAAAAAGCGTTTAAA- 870
| |||||||||| |||||||| ||||||||| |||| || | | | || ||||||||
Sbjct 519 TGTTGCAAACGCAGGAGATTCCCGGGTTGTGTTAGGGAA-AGTCGCGAATCCGTTTAAAG 577
Query 871 A-TTGTCAAGGCCGTTCAGTTATCGTCTGAGCATAATGCAAGTCTTGAATCTGTGAGAGA 929
| ||| ||||| |||||| ||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 578 AGTTG--AAGGCTGTTCAGCTATCGTCAGAGCATAATGCTAGTATTGAATCTGTGAGAGA 635
Query 930 GGAGTTGCGCTCGTTGCATCCAAATGATCCTCAGATTGTGGTCTTGAAGCACAAAGTTTG 989
|||||| || | |||||| || ||||||| | || ||||||||||| |||||||||||
Sbjct 636 GGAGTTACGTTTGTTGCACCCTGATGATCCGAATATCGTGGTCTTGAAACACAAAGTTTG 695
Query 990 GCGTGTCAAAGGTATTATACAGGTTTC-ACGGTCGATTGGTGATGCATAC-TTAAAGAAA 1047
|||||| ||||| |||||||||||||| | | || |||||||| |||||| ||||| | |
Sbjct 696 GCGTGTTAAAGGAATTATACAGGTTTCGA-GATCCATTGGTGACGCATACCTTAAA-AGA 753
Query 1048 GCAGAATTCAACCGGGAACCATTGTTGGCAAAGTTCAGGGTCCCTGAG-GTTTTCCATAA 1106
|| || || || | ||||| | ||| | ||||| || || || || ||||| | |
Sbjct 754 GCGGAGTTTAATCAAGAACCGCTATTGCCTAAGTTTAGAGTTCCAGAACGTTTTG-AGAG 812
Query 1107 GCCCATCCTTAGAGCAGAGCCGGCAATTACAGTACACAAAATCCATCCAGAAGATCAGTT 1166
||| ||| | ||||| || ||| | || ||||| || || || || || |||||||||||
Sbjct 813 GCCGATCATGAGAGCCGAACCGACTATAACAGTTCATAAGATTCACCCGGAAGATCAGTT 872
Query 1167 TCTTATATTTGCATCAGACGGCTTGTGGGAGCA-CTT-GTCCAATCAAGAAGCTGTTGAC 1224
|||||||||||| || || || || |||||||| || | | || || |||||||||||
Sbjct 873 TCTTATATTTGCCTCGGATGGTTTATGGGAGCATCTAAG-C-AACCAGGAAGCTGTTGAT 930
Query 1225 ATTGTGAACACATGCCCGCGCAATGG-GATTGCAAGGAAGCTCA-TAAAAACAGC-TCTA 1281
||||| || | || || |||||||| | | || ||||| | | | ||| | || | ||
Sbjct 931 ATTGTCAATTCTTGTCCACGCAATGGTG-TGGCTCGGAAGTT-AGTGAAAGCTGCAT-TA 987
Query 1282 -AGAGAGGCAGCAAAGAAGAGAGAGATGAGATATTCGGATCTAAAAAAGATCGATA-GAG 1339
| ||| ||||||||||||||||||||||| ||||||||| | | ||||| || | | |
Sbjct 988 CA-AGAAGCAGCAAAGAAGAGAGAGATGAGGTATTCGGATTTGGAGAAGATAGA-ACGTG 1045
Query 1340 G-AGTGCGGAGACATTTTCATGATGATATAACAGTCATAGTTGT 1382
| | | ||| |||| ||||| || |||||||| || || |||||
Sbjct 1046 GCA-TCCGGCGACACTTTCACGACGATATAACCGTTATTGTTGT 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64182062825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5