BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12630.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478622 jgi|Araly1|478622|fgenesh2_kg.3__1323__AT3G12630.1 1157 0.0
> Ahg478622 jgi|Araly1|478622|fgenesh2_kg.3__1323__AT3G12630.1
Length=917
Score = 1157 bits (626), Expect = 0.0
Identities = 861/962 (90%), Gaps = 65/962 (7%)
Strand=Plus/Plus
Query 35 ctatctctctctcctc-ATAATCGATCCGTAAACTCGCCGGAGGAGCAGGGAGATTCAAT 93
|||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 CTATCTCTCTCTCCTCGA-AATCGATCCGTAAACTCGCCGGAGGGGCAGGGAGATTCAAT 59
Query 94 AAGACGATGGCTCAGAGAACGGAGAAGGAAGAGACCGAGTTCAAAGTTCTCGAAACCTTG 153
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 60 AAGACGATGGCTCAGAGAACGGAGAAGGAAGAGACGGAGTTCAAAGTTCTTGAAACCTTG 119
Query 154 ACG---ACAACAACAACGACGTTATGTACCAATAACTGCGGCGTTACAGCGAATCCTGCG 210
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 120 ACGACAACAACAACAACGACGCTATGTACCAATAACTGCGGCGTTACAGCGAATCCTTCG 179
Query 211 ACGAACAACATGTGTCAGAAATGTTTCAACGCATCTCTCGTCTCGGCGGCCGCAGGTGTT 270
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 180 ACGAACAACATGTGTCAGAAATGTTTCAACGCATCTCTCGTCTCGGCGGCCGCCGGTGTT 239
Query 271 GTTGAATCAGGTTCGATCTTGAAGAGATCGGCTAGATCTGTCAATCTTCGTTCGTCACCA 330
||||||||||| |||||||||||||||||||| ||||||||||||||||| || ||||||
Sbjct 240 GTTGAATCAGGCTCGATCTTGAAGAGATCGGCGAGATCTGTCAATCTTCGGTCATCACCA 299
Query 331 GCTAAAGTCGTGATTCGTCCAAGAGAGATCGATGCGGTGAAGAAGAGAGATCAACAGATC 390
|||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||
Sbjct 300 GCTAAAGTCGTGATTCGTGCGAGAGAGATCGATGCGGTGAAGA-GAGA--TCAACAGATC 356
Query 391 GTAAACCGATGTTCTGGTTGTCGGAAGAAAGTTGGGTTGACCGGATTCAGGTGCCGATGC 450
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 357 GTAAACCGATGTTCTGGTTGTCGGAAGAAGGTTGGGTTGACCGGATTCAGGTGCCGATGC 416
Query 451 GGTGAGCTTTTCTGCTCAGAGCACCGTTACTCCGATCGTCATGATTGTAGCTACGACTAC 510
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 GGTGAGCTTTTCTGCTCCGAGCACCGTTACTCCGATCGTCATGATTGTAGCTACGACTAC 476
Query 511 AAAACCGCTGGTCGTGAGGCGATCGCTAGAGAAAATCCGGTGGTCAAGGCTGCGAAAATG 570
|||||||| |||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 477 AAAACCGCCGGTCGTGAGGCGATCGCTAGGGAAAATCCGGTGGTCAAGGCGGCGAAGATG 536
Query 571 GTCAAAGTTTaaaaaattaaaaaTTCGATCTCAACCGTTGAAAAACTTGTGGTGGTTCAA 630
||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 537 GTCAAAGTTTAAA---TTAAAA-TTCGATCTCAACCGTTGAAAA-CTTGTGGTGGTTCGA 591
Query 631 AAGCTCCGATCGG-A--A--G-A-GAGATTGGTCGGAGAGACATGGATTTGATTTGGTGA 683
| ||||||||| | | | | ||||| ||||||||| ||| ||||||| ||||||
Sbjct 592 A-GCTCCGATCTATACGATCGGAAGAGAT-GGTCGGAGA--CATCGATTTGAATTGGTGC 647
Query 684 TGTGTTGTAAAAGAAGATCAGAGAGATTATTCCTCTCCTCAAATCAAAATCTGAACCTCA 743
|||||||||||||||||| | | | | | |||| | || | | | | |
Sbjct 648 TGTGTTGTAAAAGAAGAT-A-A-ATCTGAA-CCTC-C---AATT-----T-T-----T-A 687
Query 744 AtttttttttttacgtttttttttCATCTTTTAATTTATATATTAGTGAATGATTATTAA 803
|||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 688 -TTTTTTTT---ACGTTTTT----CATCTTTTAATTTATATATTAGTGAATGATTATTAT 739
Query 804 TATTATTATTGTGTGGCTTACGGATTCATGAATTTGCTTCTTGATCATCGAGAAATGGTG 863
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 740 TATTATTATTGTGTGGCTTACGGATTCATGAATTTGCCTCTTGATCATCGAGAAATG-TG 798
Query 864 TATGTA--A---G--AGA--CGAAGGGGTTGTTTGGTAATTTAGGAACATGTCTTTCTGG 914
|||||| | | ||| ||||||||| | |||||||||||||||| ||||| |||||
Sbjct 799 TATGTAGGATATGGTAGAAACGAAGGGGTGGATTGGTAATTTAGGAACGTGTCTCTCTGG 858
Query 915 TTTCGTTTCGTTTCGTGTGGTAGATGTACTTATCACGATACTACTAGTCCATTGTGCGTC 974
||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 859 TTTCGTT-CGTTTCGTGTGGTAGATGTACTTATCACGG-A-TACTAGTCCATTGTGCGTC 915
Query 975 AC 976
||
Sbjct 916 AC 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5