BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12640.1 Length=2353 Score E Sequences producing significant alignments: (Bits) Value Ahg904152 jgi|Araly1|904152|Al_scaffold_0003_1280 2217 0.0 > Ahg904152 jgi|Araly1|904152|Al_scaffold_0003_1280 Length=1995 Score = 2217 bits (1200), Expect = 0.0 Identities = 1373/1457 (94%), Gaps = 9/1457 (1%) Strand=Plus/Plus Query 709 CTCAATCTCAGAGGAAAAGGTCTAGAACTGACGACTCACGGAATGAACAGAGGGAAGCTA 768 |||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 542 CTCAATCTCACAGGAAAAGGTCTAGAACTGATGACTCACGGAATGAACAGAGAGAAGCTA 601 Query 769 AACCTGATGTCTCTCGCCGGCTGCTTCAGTTTGCTGTGCGAGATGCTCTAGCTATATCAA 828 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 AACCTGATGTCTCTCGCCGGCTGCTTCAGTTTGCTGTGCGAGATGCTCTAGCTATATCAA 661 Query 829 GGCCGGCAAATAGTTCGACTGAATCCTCATTAAAACGTCTTCGTTCAGTGGTGTCCACAT 888 |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 662 GGCCGGTAAATAGTTCGACTGAATCCTCATTAAAACGTCTTCGTTCAGTGGTATCCACAT 721 Query 889 CTACTCAAAACTCATCTGACCCTGATCCAGCTCGGAAAATTCGATCTGTTGCTAGGGTTG 948 |||||||| ||||||||||||| ||||||||||||||||||||||| ||||| || |||| Sbjct 722 CTACTCAAGACTCATCTGACCCCGATCCAGCTCGGAAAATTCGATCGGTTGCAAGAGTTG 781 Query 949 TGAATCCCATGGCTACTGTTATGAAAGCTGTCGCCGAAGCAGCCGAAGATGCCAAGAAAC 1008 |||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 782 TGAACCCCATGGCAACTGTTATGAAAGCTGTCGCCGAAGCAGCTGAAGATGCCAAGAAAC 841 Query 1009 CAAAATCTGGGAGAAGTGTCTTTGACAGAATTAGTCATTCTACTGGAT---CAGAGACCC 1065 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 842 CAAGATCTGGGAGAAGTGTCTTTGACAGAATTAGTCATTCTACTGGATTTTCAGAGACCC 901 Query 1066 TGGACCAGAATATGGTACTTGGTGAAGTTTCCCCCAAGGATGAAGAATCTAGGAATTTTA 1125 |||||||| ||| ||||| ||||||||||||||||||| ||||||||| ||||||||||| Sbjct 902 TGGACCAGCATAGGGTACATGGTGAAGTTTCCCCCAAGAATGAAGAATGTAGGAATTTTA 961 Query 1126 GCCAAGGTCAGGAAGCGGTACAGCTTCAATACACACAGAGTCTTGCCAATAATGGAGTGT 1185 || ||| ||||| || ||||||||||||||||| |||||||||| ||| |||||||||| Sbjct 962 GCGAAGACCAGGATGCTGTACAGCTTCAATACACGCAGAGTCTTGACAACAATGGAGTGT 1021 Query 1186 ATTTTGAGAACATGACAACTAATGACACTGGCTTGAATCCAGATTTTTCGTCTGATCGAG 1245 || ||||||| ||||||||| |||||||||||||| | |||| ||||||||||||||||| Sbjct 1022 ATGTTGAGAAGATGACAACTTATGACACTGGCTTGCAGCCAGCTTTTTCGTCTGATCGAG 1081 Query 1246 GCAGACTCGGTTCAAGTGTTAATGTGTCTCACCCAAGTACTTATCTTGGGAACAGAATTA 1305 ||||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| Sbjct 1082 GCAGACTCGGTTCAAGTGTTAATGTTTCTCATCCAAGTACTTTTCTTGGGAACAGAATTA 1141 Query 1306 ACAATCCAAATAGTCTGCAGCATCGTTTAGTCGATGACTCCAAACGAGTTAAAGGGACAA 1365 |||||||||||||||||||||||||||| ||||||||||||||| || |||||||| || Sbjct 1142 ACAATCCAAATAGTCTGCAGCATCGTTTGGTCGATGACTCCAAAAGACTTAAAGGGTTAA 1201 Query 1366 ATTATCAAAATCGCCTTCCTGAAGTTGCA-ACCAAGCATAAGACTGCAAGTTTCTCAGGC 1424 ||||||||||||||||| ||||||||| | || ||||||||||||||||||||||| ||| Sbjct 1202 ATTATCAAAATCGCCTTACTGAAGTTG-ATACTAAGCATAAGACTGCAAGTTTCTCTGGC 1260 Query 1425 AATATAGATACAGGGAAAACAGTAAAGTT-AGAGGAGCAGAGGAAAATACCAGATGTGGG 1483 ||| ||||||||||||||||||||| ||| ||||||||||| |||| ||||||||||||| Sbjct 1261 AATGTAGATACAGGGAAAACAGTAA-GTTTAGAGGAGCAGACGAAAGTACCAGATGTGGG 1319 Query 1484 TCTGCAAAGATATATGGACGAAGGCAGATTAGTTTCTAGTGAAGCTACCACTCAATTATC 1543 ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 1320 TCTGCAAAGATATATGGACGAAGGCAGATTAGTTTCTAGTGAAGCTATCAATCAATTATC 1379 Query 1544 GACGCAGAAAATCTTGGGTGATACAATAGGGAATGGAAATGTAAAACCTGCTGCCAGTGT 1603 |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 1380 GACGCAGAAAATCTTGAGTGATACAATAAGGAATGGAAATATAAAACCTGCTGCCAATGT 1439 Query 1604 GAAAGAAGAATCAACGACCAATAAATCTGTTCCTGGGACATTATCCACTACCCGCCCTTT 1663 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1440 GAAAGAAGATTCAACGACCAATAAATCTGTTCCTGGGACATTATCCACTACCCGCCCTTT 1499 Query 1664 GGAAGATGCTAGTTCTCGAACAATCTTTGTCGCCAATGTTCATTTTGGTGCCACCAAGGA 1723 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1500 GGAAGATGCGAGTTCTCGAACAATCTTTGTCGCCAATGTTCATTTTGGTGCCACCAAGGA 1559 Query 1724 CAGCCTTTCAAGGCATTTTAACAAGTTTGGTGAAGTGCTTAAAGCTTTCATAGTTACTGA 1783 ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| || Sbjct 1560 TAGCCTTTCAAGGCATTTTAACAAGTGTGGTGAAGTGCTTAAAGCTATCATAGTTACAGA 1619 Query 1784 TCCAGCAACAGGACAACCAAGTGGATCAGCGTACATTGAGTTCACACGCAAAGAAGCTGC 1843 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1620 TCCAGCAACAGGACAACCAAGTGGATCAGCGTACATTGAGTTCACGCGTAAAGAAGCTGC 1679 Query 1844 AGAGAATGCATTGTCTCTGGATGGTACCTCTTTCATGTCTCGGATTCTCAAGATTGTGAA 1903 ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1680 AGAGAATGCATTGTCTCTGGACGGTACCTCTTTCATGTCTCGGATTCTGAAGATTGTGAA 1739 Query 1904 AGGAAGCAATGGACAAAATCAAGAGGCTGCATCGAGCATGTCATGGTCTCGAGGTGGAAG 1963 |||||||||||| ||| | ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 1740 AGGAAGCAATGGGCAACAGCAAGAGGCTGCATCGAGCATGACATGGCCTCGAGGTGGAAG 1799 Query 1964 GTTCACAAGAGC-CCCATCATACTTTAGAGGTGGTGCAGTTAGGGGTCGTTCTGTTGTTA 2022 |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1800 GTTCACAAGAGCGCCC-TCATACTTTAGAGGTGGTGCAGTTAGGGGTCGTTCTGTTGTTA 1858 Query 2023 GAGGTGGAGGCAGGAGTATGCAATGGAAGCGTGATTCAGCTGACACAGGAAACAACAACA 2082 ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| Sbjct 1859 GAGGTGGAGCCAGGAGTATGCAATGGAAGCGCGATTCAGCTGACACTGGAAACAACAACA 1918 Query 2083 ATGTAGCTCCCAACAATGCTCGTAGTCTCACGTATGTCAGAGCAGAATCAAAATCAGACG 2142 |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||| Sbjct 1919 ATGTAGCTCCCAACAATGCTCGTAGTCTCACGTACGTCCGAACAGAATCAAAATCAGACG 1978 Query 2143 GAGTTGCCAACGATTGA 2159 || |||||||||||||| Sbjct 1979 GAATTGCCAACGATTGA 1995 Score = 699 bits (378), Expect = 0.0 Identities = 441/470 (94%), Gaps = 9/470 (2%) Strand=Plus/Plus Query 243 ATGGGAAGCGCCGATCTAGTCGATGATCGGACCTTTAACGGTGATTTCAGTGTGGAAGGA 302 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGGAAGCGCCGATCTAGTCGATGATCGGACCTTTAATGGTGATTTCAGTGTGGAAGGA 60 Query 303 GTTGCTAAGTTGAAAGAGATGGTCAAGGATAAACTCAAGGAGTATATGGGCGATTACACG 362 ||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||| Sbjct 61 GTTGCCAAGTTGAAAGAGATGGTCATGGTTAAACTCAAGGAGTTTATGGGCGATTACACG 120 Query 363 GATGACATTCTTGTGGAATATGTGATCGTC-TTGCTTAGAAATGGGAGAAGAAAAGAGGA 421 ||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||| Sbjct 121 GATGACACTCTTGTGGAATATGTGATAGTCCTT-CTTAGAAATGGGAGAAGAAAAGAGGA 179 Query 422 AGCAAATAATGAATTGAAGATATTTCTTGGAGATGATAGCGACTCTTTTGTGGCCTGGTT 481 |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 180 AGCAAAGAATGAATTGAAAATATTTCTTGGAGATGATAGCGACTCTTTTGTAGCCTGGTT 239 Query 482 GTGGGATCATCTGGCTGAAAGTGTAGATGAGTACTTTAGTTCTAATGTGGAGGGAACTAC 541 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 240 GTGGGATCATCTGGCTGAAAGTGTAGATGAATACTTTAGTTCTCATGTGGAGGGAACTAC 299 Query 542 CATAAAAAGCTCATTGATAAGCAGTCA---TGAGGATAAAGCACTTGTTCCTCTGGATTC 598 |||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||| Sbjct 300 CATAAAAAGCTCATCGATAAGCAGTCAGAATGAGGATAAAGCACTTGTGCCTATGGATTC 359 Query 599 TGAATATGATAAGGG-ACGATCTGATAAATCAAATGGTGCACGTCGTGGTAGACAATGGA 657 ||||| ||| ||||| ||||||||||||||||||||||||||| || ||||||||||||| Sbjct 360 TGAATCTGA-AAGGGGACGATCTGATAAATCAAATGGTGCACGCCGCGGTAGACAATGGA 418 Query 658 GAAGCCAGCCGACTAATGTCTCTGAGAT-CCCTCCTCTTCTGAGCTCTGA 706 |||||||||| ||||||||||||||||| ||| ||||||||||| ||||| Sbjct 419 GAAGCCAGCCAACTAATGTCTCTGAGATTCCC-CCTCTTCTGAGTTCTGA 467 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88636000115 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5