BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12640.1
Length=2353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg904152 jgi|Araly1|904152|Al_scaffold_0003_1280 2217 0.0
> Ahg904152 jgi|Araly1|904152|Al_scaffold_0003_1280
Length=1995
Score = 2217 bits (1200), Expect = 0.0
Identities = 1373/1457 (94%), Gaps = 9/1457 (1%)
Strand=Plus/Plus
Query 709 CTCAATCTCAGAGGAAAAGGTCTAGAACTGACGACTCACGGAATGAACAGAGGGAAGCTA 768
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 542 CTCAATCTCACAGGAAAAGGTCTAGAACTGATGACTCACGGAATGAACAGAGAGAAGCTA 601
Query 769 AACCTGATGTCTCTCGCCGGCTGCTTCAGTTTGCTGTGCGAGATGCTCTAGCTATATCAA 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 AACCTGATGTCTCTCGCCGGCTGCTTCAGTTTGCTGTGCGAGATGCTCTAGCTATATCAA 661
Query 829 GGCCGGCAAATAGTTCGACTGAATCCTCATTAAAACGTCTTCGTTCAGTGGTGTCCACAT 888
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 662 GGCCGGTAAATAGTTCGACTGAATCCTCATTAAAACGTCTTCGTTCAGTGGTATCCACAT 721
Query 889 CTACTCAAAACTCATCTGACCCTGATCCAGCTCGGAAAATTCGATCTGTTGCTAGGGTTG 948
|||||||| ||||||||||||| ||||||||||||||||||||||| ||||| || ||||
Sbjct 722 CTACTCAAGACTCATCTGACCCCGATCCAGCTCGGAAAATTCGATCGGTTGCAAGAGTTG 781
Query 949 TGAATCCCATGGCTACTGTTATGAAAGCTGTCGCCGAAGCAGCCGAAGATGCCAAGAAAC 1008
|||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 782 TGAACCCCATGGCAACTGTTATGAAAGCTGTCGCCGAAGCAGCTGAAGATGCCAAGAAAC 841
Query 1009 CAAAATCTGGGAGAAGTGTCTTTGACAGAATTAGTCATTCTACTGGAT---CAGAGACCC 1065
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 842 CAAGATCTGGGAGAAGTGTCTTTGACAGAATTAGTCATTCTACTGGATTTTCAGAGACCC 901
Query 1066 TGGACCAGAATATGGTACTTGGTGAAGTTTCCCCCAAGGATGAAGAATCTAGGAATTTTA 1125
|||||||| ||| ||||| ||||||||||||||||||| ||||||||| |||||||||||
Sbjct 902 TGGACCAGCATAGGGTACATGGTGAAGTTTCCCCCAAGAATGAAGAATGTAGGAATTTTA 961
Query 1126 GCCAAGGTCAGGAAGCGGTACAGCTTCAATACACACAGAGTCTTGCCAATAATGGAGTGT 1185
|| ||| ||||| || ||||||||||||||||| |||||||||| ||| ||||||||||
Sbjct 962 GCGAAGACCAGGATGCTGTACAGCTTCAATACACGCAGAGTCTTGACAACAATGGAGTGT 1021
Query 1186 ATTTTGAGAACATGACAACTAATGACACTGGCTTGAATCCAGATTTTTCGTCTGATCGAG 1245
|| ||||||| ||||||||| |||||||||||||| | |||| |||||||||||||||||
Sbjct 1022 ATGTTGAGAAGATGACAACTTATGACACTGGCTTGCAGCCAGCTTTTTCGTCTGATCGAG 1081
Query 1246 GCAGACTCGGTTCAAGTGTTAATGTGTCTCACCCAAGTACTTATCTTGGGAACAGAATTA 1305
||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct 1082 GCAGACTCGGTTCAAGTGTTAATGTTTCTCATCCAAGTACTTTTCTTGGGAACAGAATTA 1141
Query 1306 ACAATCCAAATAGTCTGCAGCATCGTTTAGTCGATGACTCCAAACGAGTTAAAGGGACAA 1365
|||||||||||||||||||||||||||| ||||||||||||||| || |||||||| ||
Sbjct 1142 ACAATCCAAATAGTCTGCAGCATCGTTTGGTCGATGACTCCAAAAGACTTAAAGGGTTAA 1201
Query 1366 ATTATCAAAATCGCCTTCCTGAAGTTGCA-ACCAAGCATAAGACTGCAAGTTTCTCAGGC 1424
||||||||||||||||| ||||||||| | || ||||||||||||||||||||||| |||
Sbjct 1202 ATTATCAAAATCGCCTTACTGAAGTTG-ATACTAAGCATAAGACTGCAAGTTTCTCTGGC 1260
Query 1425 AATATAGATACAGGGAAAACAGTAAAGTT-AGAGGAGCAGAGGAAAATACCAGATGTGGG 1483
||| ||||||||||||||||||||| ||| ||||||||||| |||| |||||||||||||
Sbjct 1261 AATGTAGATACAGGGAAAACAGTAA-GTTTAGAGGAGCAGACGAAAGTACCAGATGTGGG 1319
Query 1484 TCTGCAAAGATATATGGACGAAGGCAGATTAGTTTCTAGTGAAGCTACCACTCAATTATC 1543
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1320 TCTGCAAAGATATATGGACGAAGGCAGATTAGTTTCTAGTGAAGCTATCAATCAATTATC 1379
Query 1544 GACGCAGAAAATCTTGGGTGATACAATAGGGAATGGAAATGTAAAACCTGCTGCCAGTGT 1603
|||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| |||
Sbjct 1380 GACGCAGAAAATCTTGAGTGATACAATAAGGAATGGAAATATAAAACCTGCTGCCAATGT 1439
Query 1604 GAAAGAAGAATCAACGACCAATAAATCTGTTCCTGGGACATTATCCACTACCCGCCCTTT 1663
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GAAAGAAGATTCAACGACCAATAAATCTGTTCCTGGGACATTATCCACTACCCGCCCTTT 1499
Query 1664 GGAAGATGCTAGTTCTCGAACAATCTTTGTCGCCAATGTTCATTTTGGTGCCACCAAGGA 1723
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 GGAAGATGCGAGTTCTCGAACAATCTTTGTCGCCAATGTTCATTTTGGTGCCACCAAGGA 1559
Query 1724 CAGCCTTTCAAGGCATTTTAACAAGTTTGGTGAAGTGCTTAAAGCTTTCATAGTTACTGA 1783
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||
Sbjct 1560 TAGCCTTTCAAGGCATTTTAACAAGTGTGGTGAAGTGCTTAAAGCTATCATAGTTACAGA 1619
Query 1784 TCCAGCAACAGGACAACCAAGTGGATCAGCGTACATTGAGTTCACACGCAAAGAAGCTGC 1843
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1620 TCCAGCAACAGGACAACCAAGTGGATCAGCGTACATTGAGTTCACGCGTAAAGAAGCTGC 1679
Query 1844 AGAGAATGCATTGTCTCTGGATGGTACCTCTTTCATGTCTCGGATTCTCAAGATTGTGAA 1903
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1680 AGAGAATGCATTGTCTCTGGACGGTACCTCTTTCATGTCTCGGATTCTGAAGATTGTGAA 1739
Query 1904 AGGAAGCAATGGACAAAATCAAGAGGCTGCATCGAGCATGTCATGGTCTCGAGGTGGAAG 1963
|||||||||||| ||| | ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1740 AGGAAGCAATGGGCAACAGCAAGAGGCTGCATCGAGCATGACATGGCCTCGAGGTGGAAG 1799
Query 1964 GTTCACAAGAGC-CCCATCATACTTTAGAGGTGGTGCAGTTAGGGGTCGTTCTGTTGTTA 2022
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 GTTCACAAGAGCGCCC-TCATACTTTAGAGGTGGTGCAGTTAGGGGTCGTTCTGTTGTTA 1858
Query 2023 GAGGTGGAGGCAGGAGTATGCAATGGAAGCGTGATTCAGCTGACACAGGAAACAACAACA 2082
||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1859 GAGGTGGAGCCAGGAGTATGCAATGGAAGCGCGATTCAGCTGACACTGGAAACAACAACA 1918
Query 2083 ATGTAGCTCCCAACAATGCTCGTAGTCTCACGTATGTCAGAGCAGAATCAAAATCAGACG 2142
|||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||
Sbjct 1919 ATGTAGCTCCCAACAATGCTCGTAGTCTCACGTACGTCCGAACAGAATCAAAATCAGACG 1978
Query 2143 GAGTTGCCAACGATTGA 2159
|| ||||||||||||||
Sbjct 1979 GAATTGCCAACGATTGA 1995
Score = 699 bits (378), Expect = 0.0
Identities = 441/470 (94%), Gaps = 9/470 (2%)
Strand=Plus/Plus
Query 243 ATGGGAAGCGCCGATCTAGTCGATGATCGGACCTTTAACGGTGATTTCAGTGTGGAAGGA 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGAAGCGCCGATCTAGTCGATGATCGGACCTTTAATGGTGATTTCAGTGTGGAAGGA 60
Query 303 GTTGCTAAGTTGAAAGAGATGGTCAAGGATAAACTCAAGGAGTATATGGGCGATTACACG 362
||||| ||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 61 GTTGCCAAGTTGAAAGAGATGGTCATGGTTAAACTCAAGGAGTTTATGGGCGATTACACG 120
Query 363 GATGACATTCTTGTGGAATATGTGATCGTC-TTGCTTAGAAATGGGAGAAGAAAAGAGGA 421
||||||| |||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct 121 GATGACACTCTTGTGGAATATGTGATAGTCCTT-CTTAGAAATGGGAGAAGAAAAGAGGA 179
Query 422 AGCAAATAATGAATTGAAGATATTTCTTGGAGATGATAGCGACTCTTTTGTGGCCTGGTT 481
|||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 180 AGCAAAGAATGAATTGAAAATATTTCTTGGAGATGATAGCGACTCTTTTGTAGCCTGGTT 239
Query 482 GTGGGATCATCTGGCTGAAAGTGTAGATGAGTACTTTAGTTCTAATGTGGAGGGAACTAC 541
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 240 GTGGGATCATCTGGCTGAAAGTGTAGATGAATACTTTAGTTCTCATGTGGAGGGAACTAC 299
Query 542 CATAAAAAGCTCATTGATAAGCAGTCA---TGAGGATAAAGCACTTGTTCCTCTGGATTC 598
|||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||
Sbjct 300 CATAAAAAGCTCATCGATAAGCAGTCAGAATGAGGATAAAGCACTTGTGCCTATGGATTC 359
Query 599 TGAATATGATAAGGG-ACGATCTGATAAATCAAATGGTGCACGTCGTGGTAGACAATGGA 657
||||| ||| ||||| ||||||||||||||||||||||||||| || |||||||||||||
Sbjct 360 TGAATCTGA-AAGGGGACGATCTGATAAATCAAATGGTGCACGCCGCGGTAGACAATGGA 418
Query 658 GAAGCCAGCCGACTAATGTCTCTGAGAT-CCCTCCTCTTCTGAGCTCTGA 706
|||||||||| ||||||||||||||||| ||| ||||||||||| |||||
Sbjct 419 GAAGCCAGCCAACTAATGTCTCTGAGATTCCC-CCTCTTCTGAGTTCTGA 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88636000115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5