BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12650.1 Length=802 Score E Sequences producing significant alignments: (Bits) Value Ahg478624 jgi|Araly1|478624|fgenesh2_kg.3__1325__AT3G12650.1 1179 0.0 Ahg891066 jgi|Araly1|891066|Al_scaffold_0007_3052 329 2e-89 > Ahg478624 jgi|Araly1|478624|fgenesh2_kg.3__1325__AT3G12650.1 Length=754 Score = 1179 bits (638), Expect = 0.0 Identities = 717/755 (95%), Gaps = 5/755 (1%) Strand=Plus/Plus Query 1 GAGCTTCTTCTCTGCATCGAAATCGGCGACGACGATGATGATCTCTCGTCGATTGGTTTC 60 |||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||| Sbjct 1 GAGCTTCTTCTCTGTATCGAATTCGGCGACGAAGATGATGATCTCTCGTCGATTGGTTTC 60 Query 61 AAAATTCCTTAAACCCTTGTCTTCTCCATCTTTCCACGTCTCTCGCCGTCATCTCCAATC 120 |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 61 TAAATTCCTTAAACCCTTGTCATCTCCATCTTTCCATGTTTCTCGCCGTCATCTCCAATC 120 Query 121 TTCCTCATCTCTCATAAGAAACCATCTGATCCACGGATCAGTAACTAAGGAGCTTGGTCT 180 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 121 TTCCTCATCTCTCATAAGAAACCATCTGATCCACGGATCAGTAACTCAGGAGCTTGGTCT 180 Query 181 CTTAAGATCCTTTTCTGTTTTCAATATCGACAAACTTAGATCTGAAACATGGTCACCGAG 240 ||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||| Sbjct 181 CTTAAGATCATTTTCTGCTTTCAATATCGACAAGCTTCGATCTGAAACATGGTCACCGAG 240 Query 241 GTATTTCTCGACACCAAGCGGAGAGACCGAGCCGAAGAAGCCAG-AG-GAA-TCGAAGGA 297 |||||||||||| |||||||||||||||||||| |||||||||| || | | |||||| Sbjct 241 GTATTTCTCGACTCCAAGCGGAGAGACCGAGCCCAAGAAGCCAGCAGAGGAGTCGAAGCC 300 Query 298 AGAGGAGCTGCAGAAGATGAAGCACCAGGAGATCGAAGGACCAACTGTGGAACGCGATTT 357 ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 301 AGAGGAGCTGCCGAAGATGAAGCACCAGGAGATCGAAGGACCAACAGTGGAACGCGATTT 360 Query 358 GTCAGCGTTAGGAAATGAGACGAGACAAGTGTTGGAAGGGATGATGAAGAATATGTATAG 417 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 361 GTCGGCGTTAGGAAATGAGACGAGACAAGTGTTGGAAGGGATGATGAAGAACATGTATAG 420 Query 418 TCTAAGTGGAGCTATGGGTGCT-TTGGGTTTAACTCAATTGATTCTTGGAGCGGCGATTT 476 | | |||||||| ||||||||| |||| ||||||||| |||||||||||||| ||||||| Sbjct 421 TTTGAGTGGAGCCATGGGTGCTCTTGG-TTTAACTCAGTTGATTCTTGGAGCAGCGATTT 479 Query 477 TATACGCCACTCGAGCAGATCCGATGAAGGAAATGACAATTCAGAGCTGTATAGCTTTCG 536 | ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 TGTACGCGACTCGATCAGATCCGATGAAGGAAATGACAATTCAGAGCTGTATAGCTTTCG 539 Query 537 GATTCCCGTTTGCGATGGCGTTGATGGTGAGAAGATCGTTGAAGCCAATGTACTTCTTCA 596 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 540 GATTCCCGTTTGCGATGGCGTTGATGGTGAGACGATCGTTGAAGCCAATGTACTTCTTCA 599 Query 597 AGAAGATGGAAGAGTTAGGTAGGCTGCAGATTCTTACTTTGACACTTCAAGTTGCTAAGA 656 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 600 AGAAGATGGAAGAGTTAGGTAGGTTGCAGATTCTTACTTTGACACTTCAAGTTGCTAAGA 659 Query 657 ATCTCAATCTGTTGTTCGTTAGAGCTCGTGTTGTTTCCATCTTGTGCGTTGTTGCCTTGT 716 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 ATCTCAATTTGTTGTTCGTTAGAGCTCGTGTTGTTTCCATCTTGTGCGTTGTTGCCTTGT 719 Query 717 GTTTCGGTAACTTGTTCCTCTTGTTATCACCATGA 751 ||||||| ||||||||||||||||||||||||||| Sbjct 720 GTTTCGGAAACTTGTTCCTCTTGTTATCACCATGA 754 > Ahg891066 jgi|Araly1|891066|Al_scaffold_0007_3052 Length=489 Score = 329 bits (178), Expect = 2e-89 Identities = 235/262 (90%), Gaps = 5/262 (2%) Strand=Plus/Plus Query 274 GAAGAAGCCAGAGGAATCGAA-GGAAGAGGAGCTGCAGAAGATGAAGCACCAGGAGATCG 332 ||||||| ||||||| | || | |||||||| | ||||||||||||||||||||||| Sbjct 159 GAAGAAGACAGAGGAGT-TAACGCCAGAGGAGC--C-GAAGATGAAGCACCAGGAGATCG 214 Query 333 AAGGACCAACTGTGGAACGCGATTTGTCAGCGTTAGGAAATGAGACGAGACAAGTGTTGG 392 | || || |||||||||||||||||||| ||| ||||||||||||||||||||||||||| Sbjct 215 ATGGCCCGACTGTGGAACGCGATTTGTCGGCGCTAGGAAATGAGACGAGACAAGTGTTGG 274 Query 393 AAGGGATGATGAAGAATATGTATAGTCTAAGTGGAGCTATGGGTGCTTTGGGTTTAACTC 452 |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 275 AAGGGATGATGAAGAATATGTACAGTCTAAGTGGAGCTATGGGTGCTCTGGGTTTAACTC 334 Query 453 AATTGATTCTTGGAGCGGCGATTTTATACGCCACTCGAGCAGATCCGATGAAGGAAATGA 512 || ||||| | |||||| ||||||| ||||| ||| || ||||||||||||||||||||| Sbjct 335 AACTGATTGTAGGAGCGACGATTTTGTACGCGACTAGATCAGATCCGATGAAGGAAATGA 394 Query 513 CAATTCAGAGCTGTATAGCTTT 534 |||| ||||||||||| ||||| Sbjct 395 CAATCCAGAGCTGTATTGCTTT 416 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29621506509 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5