BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12650.1
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478624 jgi|Araly1|478624|fgenesh2_kg.3__1325__AT3G12650.1 1179 0.0
Ahg891066 jgi|Araly1|891066|Al_scaffold_0007_3052 329 2e-89
> Ahg478624 jgi|Araly1|478624|fgenesh2_kg.3__1325__AT3G12650.1
Length=754
Score = 1179 bits (638), Expect = 0.0
Identities = 717/755 (95%), Gaps = 5/755 (1%)
Strand=Plus/Plus
Query 1 GAGCTTCTTCTCTGCATCGAAATCGGCGACGACGATGATGATCTCTCGTCGATTGGTTTC 60
|||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 GAGCTTCTTCTCTGTATCGAATTCGGCGACGAAGATGATGATCTCTCGTCGATTGGTTTC 60
Query 61 AAAATTCCTTAAACCCTTGTCTTCTCCATCTTTCCACGTCTCTCGCCGTCATCTCCAATC 120
|||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||
Sbjct 61 TAAATTCCTTAAACCCTTGTCATCTCCATCTTTCCATGTTTCTCGCCGTCATCTCCAATC 120
Query 121 TTCCTCATCTCTCATAAGAAACCATCTGATCCACGGATCAGTAACTAAGGAGCTTGGTCT 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 TTCCTCATCTCTCATAAGAAACCATCTGATCCACGGATCAGTAACTCAGGAGCTTGGTCT 180
Query 181 CTTAAGATCCTTTTCTGTTTTCAATATCGACAAACTTAGATCTGAAACATGGTCACCGAG 240
||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 181 CTTAAGATCATTTTCTGCTTTCAATATCGACAAGCTTCGATCTGAAACATGGTCACCGAG 240
Query 241 GTATTTCTCGACACCAAGCGGAGAGACCGAGCCGAAGAAGCCAG-AG-GAA-TCGAAGGA 297
|||||||||||| |||||||||||||||||||| |||||||||| || | | ||||||
Sbjct 241 GTATTTCTCGACTCCAAGCGGAGAGACCGAGCCCAAGAAGCCAGCAGAGGAGTCGAAGCC 300
Query 298 AGAGGAGCTGCAGAAGATGAAGCACCAGGAGATCGAAGGACCAACTGTGGAACGCGATTT 357
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 AGAGGAGCTGCCGAAGATGAAGCACCAGGAGATCGAAGGACCAACAGTGGAACGCGATTT 360
Query 358 GTCAGCGTTAGGAAATGAGACGAGACAAGTGTTGGAAGGGATGATGAAGAATATGTATAG 417
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 GTCGGCGTTAGGAAATGAGACGAGACAAGTGTTGGAAGGGATGATGAAGAACATGTATAG 420
Query 418 TCTAAGTGGAGCTATGGGTGCT-TTGGGTTTAACTCAATTGATTCTTGGAGCGGCGATTT 476
| | |||||||| ||||||||| |||| ||||||||| |||||||||||||| |||||||
Sbjct 421 TTTGAGTGGAGCCATGGGTGCTCTTGG-TTTAACTCAGTTGATTCTTGGAGCAGCGATTT 479
Query 477 TATACGCCACTCGAGCAGATCCGATGAAGGAAATGACAATTCAGAGCTGTATAGCTTTCG 536
| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGTACGCGACTCGATCAGATCCGATGAAGGAAATGACAATTCAGAGCTGTATAGCTTTCG 539
Query 537 GATTCCCGTTTGCGATGGCGTTGATGGTGAGAAGATCGTTGAAGCCAATGTACTTCTTCA 596
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 540 GATTCCCGTTTGCGATGGCGTTGATGGTGAGACGATCGTTGAAGCCAATGTACTTCTTCA 599
Query 597 AGAAGATGGAAGAGTTAGGTAGGCTGCAGATTCTTACTTTGACACTTCAAGTTGCTAAGA 656
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 AGAAGATGGAAGAGTTAGGTAGGTTGCAGATTCTTACTTTGACACTTCAAGTTGCTAAGA 659
Query 657 ATCTCAATCTGTTGTTCGTTAGAGCTCGTGTTGTTTCCATCTTGTGCGTTGTTGCCTTGT 716
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATCTCAATTTGTTGTTCGTTAGAGCTCGTGTTGTTTCCATCTTGTGCGTTGTTGCCTTGT 719
Query 717 GTTTCGGTAACTTGTTCCTCTTGTTATCACCATGA 751
||||||| |||||||||||||||||||||||||||
Sbjct 720 GTTTCGGAAACTTGTTCCTCTTGTTATCACCATGA 754
> Ahg891066 jgi|Araly1|891066|Al_scaffold_0007_3052
Length=489
Score = 329 bits (178), Expect = 2e-89
Identities = 235/262 (90%), Gaps = 5/262 (2%)
Strand=Plus/Plus
Query 274 GAAGAAGCCAGAGGAATCGAA-GGAAGAGGAGCTGCAGAAGATGAAGCACCAGGAGATCG 332
||||||| ||||||| | || | |||||||| | |||||||||||||||||||||||
Sbjct 159 GAAGAAGACAGAGGAGT-TAACGCCAGAGGAGC--C-GAAGATGAAGCACCAGGAGATCG 214
Query 333 AAGGACCAACTGTGGAACGCGATTTGTCAGCGTTAGGAAATGAGACGAGACAAGTGTTGG 392
| || || |||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 215 ATGGCCCGACTGTGGAACGCGATTTGTCGGCGCTAGGAAATGAGACGAGACAAGTGTTGG 274
Query 393 AAGGGATGATGAAGAATATGTATAGTCTAAGTGGAGCTATGGGTGCTTTGGGTTTAACTC 452
|||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 275 AAGGGATGATGAAGAATATGTACAGTCTAAGTGGAGCTATGGGTGCTCTGGGTTTAACTC 334
Query 453 AATTGATTCTTGGAGCGGCGATTTTATACGCCACTCGAGCAGATCCGATGAAGGAAATGA 512
|| ||||| | |||||| ||||||| ||||| ||| || |||||||||||||||||||||
Sbjct 335 AACTGATTGTAGGAGCGACGATTTTGTACGCGACTAGATCAGATCCGATGAAGGAAATGA 394
Query 513 CAATTCAGAGCTGTATAGCTTT 534
|||| ||||||||||| |||||
Sbjct 395 CAATCCAGAGCTGTATTGCTTT 416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29621506509
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5