BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12660.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478625 jgi|Araly1|478625|fgenesh2_kg.3__1326__AT3G12660.1 1188 0.0
> Ahg478625 jgi|Araly1|478625|fgenesh2_kg.3__1326__AT3G12660.1
Length=756
Score = 1188 bits (643), Expect = 0.0
Identities = 721/758 (95%), Gaps = 7/758 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCTTCACTTACAATCTTCTTCTTCTTTTTTGCTTCCACATTCCTCTACACTTCA 60
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTTCACTTACAATCTTCTTCTTC---TTTGCTTCCACATTCCTCTACACTTCA 57
Query 61 TCAAATTCATTCAACATCACTAACATCTTAAACGAGCACGATGATTTCTCAAATTTCAAC 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 58 TCAAATTCATTCAACATCACTAACATCTTAAACGAGCATGATGATTTCTCAACTTTCAAC 117
Query 121 CAGCTTCTCTCCGAAACTCAGCTCGCTTCTACCATCAACAAACGTCAAACCATAACCGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 CAGCTTCTCTCCGAAACTCAGCTCGCTTCTACCATCAACAAACGTCAAACCATAACCGTC 177
Query 181 CTTGTGGTTTCCAACGGTGCActctcctctctctctGGCCAACCAACCTCCGTCATCAAG 240
||||||||||||||||| ||||||||||||||||| |||||||||||| |||| ||||||
Sbjct 178 CTTGTGGTTTCCAACGGCGCACTCTCCTCTCTCTCCGGCCAACCAACCGCCGTTATCAAG 237
Query 241 AAAATCCTTAGCCTTCACATTGTTTTAGATTACTACGACCAGAAGAAACTCAAGAATCTG 300
|||||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 238 AAAATCCTTAGCCTCCACATCGTTTTAGATTACTATGACCAGAAGAAACTCAACAATCTG 297
Query 301 AGCAAGAAAACAGTACTCCTCACCACTCTTTTCCAATCTAGCGGTCTAGCCAGAGGCCAA 360
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 298 AGCAAGAAATCAGTACTCCTCACCACTCTTTTCCAATCTAGCGGCCTAGCCAGAGGCCAG 357
Query 361 CAAGGGTTCTTGAACGCAACCGTTATGAAAAACGGAGACGTGGCGTTTGGTTCTGCGGTT 420
||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||
Sbjct 358 CAAGGGTTCTTGAACGCAACCGTTACGAAAGACGGAGACGTGGCGTTTGGATCTGCGGTT 417
Query 421 CCTGGGTCTAGCCTTGATGCTCAGCTTCAAGACACTGTAGCAG-CACTACCGTTTAACAT 479
||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||
Sbjct 418 CCTGGGTCTAGCCTTGATGCTCAGCTTCAAGACACTGTAGC-GTCACTACCATTTAACAT 476
Query 480 CTCTGTGCTTCATATTAGTAGTGCTATAATGATTGATGTTAAAGGTGATAATGCACCTAC 539
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTCGGTGCTTCATATTAGTAGTGCTATAATGATTGATGTTAAAGGTGATAATGCACCTAC 536
Query 540 TGCTTCTCCTTTGTCACCGGTATCATCTCCACCACGCCCTGCAGAATCACCTAATGATGA 599
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 537 TGCTTCTCCTTTGTCACCGGTATCATCTCCACCGCGCCCTGCAGAATCACCTAAGGATGA 596
Query 600 TGGTCAAGATTTTGACGAGCCACCATCCTCTGCTCCTGGTGCTGCTGCTGATGAACCTTC 659
|||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 597 TGGTCATGATTTTGACGAGCCACCATCCTCTGCTCCTGATGCTGCTGCTGATGGACCTTC 656
Query 660 CGAAAACGCCGGCTCAGCTAATGGAGTTTCAAGAAACGATTCTCAGCCCGCTTTCGCGTT 719
|||||||||||||||||| |||||||||||||| | |||||||||||| || ||| ||||
Sbjct 657 CGAAAACGCCGGCTCAGCCAATGGAGTTTCAAGGATCGATTCTCAGCCTGCGTTCACGTT 716
Query 720 TACGCTGTTGATGTCATTC-ATTTGGTGGTTCATGGCT 756
| ||||||||||||| ||| ||||||||||||||||||
Sbjct 717 TCCGCTGTTGATGTC-TTCCATTTGGTGGTTCATGGCT 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5