BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12680.1
Length=1916
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478627 jgi|Araly1|478627|fgenesh2_kg.3__1328__AT3G12680.1 2793 0.0
> Ahg478627 jgi|Araly1|478627|fgenesh2_kg.3__1328__AT3G12680.1
Length=1826
Score = 2793 bits (1512), Expect = 0.0
Identities = 1751/1861 (94%), Gaps = 37/1861 (2%)
Strand=Plus/Plus
Query 52 GTAAACCCCACAAACACAACAATTTTGATAATTTGTTTGACACCAAAAAAGTAGAAAGCT 111
|||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||
Sbjct 1 GTAAACCCCACAAACACAACAA-TTTGATAA----TTTGACACC-AAAAAGTAGAAAGC- 53
Query 112 TTTTCCTTTAGGGTTTCCT-TTTTCGATCGAATGGCACATCGTCAATTGTATAGCTACGC 170
||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||
Sbjct 54 -TTTCCTTTAGGGTTT-CTCTTTTCAATCGAATGGCACATCGTCAATTGTATAGCTACGC 111
Query 171 CCTTCAACCTTCTTATGCTGCTGCTGCCTCCACCGTATCTCCAGCTCCTCCTCCGCCGCA 230
|||||||||||||| | |||||||||||| |||||||||||| |||||||||||||
Sbjct 112 TCTTCAACCTTCTTA--C-GCTGCTGCCTCCGCCGTATCTCCAG---CTCCTCCGCCGCA 165
Query 231 ACAACCACTGCCGCCAAAAACCGGTCTTTCTTCTCTCTACGGTTCTTCTGCTGACCATTA 290
|| | || ||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 166 AC-AGCA--GCCGCCAAAAACCGGTCTTTCCTCTCTCTACGGTTCTTCTGCTGATCATTA 222
Query 291 CTT-TCCGGATACCACGTATCGTTTCTTAGCTCGTGATGGATCCGAAGCTTTGAGCAACT 349
|| || |||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 223 -TTACCCCGATACCACGTTTCGTTTCTTAGCTCGCGATGGATCCGAAGCTTTGAGCAACT 281
Query 350 ATTCAGGGACTCTTGCATCGTCTTCCTCTATGTACCATCATTTGCCTAACACGACGGCAT 409
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 282 ATTCAGGGACTCTTGCATCGTCTTCCGCTATGTACCACCATTTGCCTAACACGACGGCAT 341
Query 410 CGCATTTGGCGTATCCTCAGCTGCTTCAGCATCAGGAAGTTGCTTGGCCACCTGGTGTGG 469
|||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||
Sbjct 342 CGCATTTGGCGTATCCGCAGCTGCTTCAACATCAGGAAGCAGCTTGGCCACCTGGTGTGG 401
Query 470 AGGTTCCCGGTGCTGCTTCCGCCGTCGAGCCACTTCCTCCTGGTGTCAAACGCACCTCTG 529
||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 402 AGGTTCCAGGTGCTTCTTCCGCCGTCGAGCCACTTCCGCCTGGTGTCAAACGCACCTCTG 461
Query 530 AAGCGCTCTACTATCCGACTCTGTTGGGTGCCCATAATACAATTGGTCAAACCGAAGCTT 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 462 AAGCGCTCTACTATCCGACTCTGTTGGGTGCCCATAATACAATTGGTCAAACCGAAGCTT 521
Query 590 GGTATACTACAGACTATTTTACCAAGCGCCCTAAGTTGGAGAGTACAAGCCATTTGCCTA 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 522 GGTATACTACAGACTATTTTACCAAGCGCCCTAAGTTGGAGAGTACAAGCCATTTGCCTA 581
Query 650 TATATCCACAGAGGGCAGGAGAGAAAGATTGTACCCACTATATGCAAACAAGAACATGTA 709
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 582 TATATCCACAGAGGGCAGGAGAGAAGGATTGTACCCACTATATGCAAACAAGAACATGTA 641
Query 710 AATTTGGAGAAAGCTGCAGGTTTGATCATCCTATTTGGGTTCCTGAGGGCGGAATCCCAG 769
|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 642 AATTTGGAGATAGCTGCAAGTTTGATCATCCTATTTGGGTTCCTGAGGGCGGAATCCCAG 701
Query 770 ATTGGAAAGAGGCACCAGTTGTTCCAAATGAAGAGTATCCTGAGAGACCAGGAGAACCAG 829
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 702 ATTGGAAAGAGGCACCAGTTGTTCCAAATGAAGAGTACCCTGAGAGACCAGGAGAACCAG 761
Query 830 ATTGTCCTTACTATATAAAAACACAACGCTGCAAATATGGTTCAAAGTGCAAATTTAATC 889
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 762 ATTGTCCTTACTATATAAAAACCCAACGCTGCAAATATGGTTCAAGGTGCAAATTTAATC 821
Query 890 ATCCAAGAGAAGAGGCTGCAGTTAGTGTTGAAACTCAAGATTCATTGCCTGAGAGGCCTT 949
|||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 822 ATCCGAGAGAAGAGGCTGCAGTTAGTGTTGAAACCCAAGATGCATTGCCTGAGAGGCCTT 881
Query 950 CTGAACCTATGTGCACATTCTACATGAAGACTGGAAAATGTAAATTTGGTTTGTCATGCA 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 882 CTGAACCTATGTGCACATTCTACATGAAGACTGGAAAATGTAAATTTGGTTTAACATGCA 941
Query 1010 AATTCCACCATCCAAAGGATATCCAGCTACCATCATCGAGTCAAGATATTGGTAGCAGTG 1069
|||||||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||
Sbjct 942 AATTCCACCATCCAAAGGATATCCAGGTACCATCATCTAGTCAGGATAATGGTAGCAGTG 1001
Query 1070 TGGGGTTAACCAGTGAGCCTGATGCCACAAACAATCCGCATGTCACATTTACCCCAGCAT 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TGGGGTTAACCAGTGAGCCTGATGCCACAAACAATCCGCATGTCACATTTACCCCAGCAT 1061
Query 1130 TGTATCACAACTCAAAAGGACTACCTGTTAGATCGGGTGAAGTGGACTGCCCATTCTATC 1189
||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1062 TGTATCATAACTCGAAAGGACTACCTGTTAGACCGGGCGAAGTGGACTGCCCATTCTATC 1121
Query 1190 TCAAAACGGGAAGCTGCAAGTATGGAGCCACTTGTCGCTACAATCATCCTGAGAGGACTG 1249
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 TCAAAACCGGAAGCTGCAAGTATGGAGCCACTTGTCGCTACAATCATCCTGAGAGGACTG 1181
Query 1250 CATTCATTCCCCAAGCTGCTGGGGTAAACTATTCTCTAGTTTCATCGAACACTGCGAATT 1309
|||| || ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 1182 CATTTATCCCCCAAGCTACTGGGATAAACTATTCTCTAGTTTCGTCGAACACTGCGAATT 1241
Query 1310 TGAACCTTGGGCTGGTTACACCAGCTACCTCTTTCTATCAGACTCTTACTCAACCCACGC 1369
| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1242 TAAACCTTGGGATGGTTACACCAGCTACCTCCTTCTACCAGACTCTTACTCAACCCACGC 1301
Query 1370 TTGGAGTGATTTCAGCAACTTATCCCCAAAGACCTGGACAATCAGAATGTGACTACTACA 1429
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1302 TTGGAGCGCTTTCAGCAACTTATCCCCAAAGACCTGGACAATCAGAATGTGACTACTACA 1361
Query 1430 TGAAGACAGGGGAGTGCAAGTTTGGAGAGAGATGCAAATTCCATCACCCAGCAGATAGGT 1489
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1362 TGAAGACAGGGGAGTGCAAGTTTGGAGAGAAATGCAGGTTCCATCACCCAGCAGATAGGT 1421
Query 1490 TAAGTGCAATGACCAAACAAGCTCCTCAACAACCAAATGTAAAGCTGAGTCTTGCAGGGT 1549
||||||||| || ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1422 TAAGTGCAACGAGCAATCAAGCTTCTCAACAACCAAATGTAAAGCTGAGTCTTGCAGGGT 1481
Query 1550 ATCCCAGAAGAGAGGGTGCGCTTAATTGCCCTTATTACATGAAGACAGGAACTTGCAAAT 1609
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1482 ATCCCAGAAGAGAGGGTGCGCTTAATTGCCCTTATTACATGAAGACAGGGACTTGCAAAT 1541
Query 1610 ACGGGGCAACATGCAAGTTTGACCATCCTCCTCCAGGTGAGGTGATGGCTAAGACCACTT 1669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 ACGGGGCAACATGCAAGTTTGACCATCCTCCTCCAGGTGAGGTGATGGCTAAGACCACTT 1601
Query 1670 CAGAAGCCGATGCTGCTGGAGCAACCAACACCGACACTACTCAATGAGTTTCCCAGCTTT 1729
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1602 CAGAAGCCGATGCTGCTGGAGCAACC------GACACTACTCAATGAGTTTCCCAGCTTT 1655
Query 1730 GTGTAACATAAGATGATATCTTGTTGTAATCCTAGTTTACTTCCTATGTACTGCATCTGT 1789
|| ||| ||||||||||||| |||||||||| |||||||||| |||||| |||||||||
Sbjct 1656 GTATAAGATAAGATGATATCGTGTTGTAATCTTAGTTTACTTGCTATGTTGTGCATCTGT 1715
Query 1790 TTCGTTTCGAAATGCTTATCGCTCGTGAGTTCTCTACTTCTCTTTATCATCCTAAAACAA 1849
|||||||| |||||||| |||||| |||||||||| || ||||||||||||| |
Sbjct 1716 TTCGTTTC-AAATGCTTGTCGCTCCTGAGTTCTCT--TT------ATCATCCTAAAACGA 1766
Query 1850 AAAAGATATCGTTGAGTGAGTCTTCTTTTACTCAGTTGAGCTCATAAAAGCAAAATTGTT 1909
||| || || |||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1767 AAA-GAAATGGTTGAGCGAGTCTTCTTTTACTCAGTTGAGTTCATAAAGGCAAAATTGTT 1825
Query 1910 C 1910
|
Sbjct 1826 C 1826
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71990563050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5