BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12685.1
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478628 jgi|Araly1|478628|fgenesh2_kg.3__1329__AT3G12685.1 1210 0.0
> Ahg478628 jgi|Araly1|478628|fgenesh2_kg.3__1329__AT3G12685.1
Length=812
Score = 1210 bits (655), Expect = 0.0
Identities = 767/817 (94%), Gaps = 24/817 (3%)
Strand=Plus/Plus
Query 1 GACATAACAGAGCGTCAGAACCATTGGTTCCAAATTTCTCGCTGCCTTATTCTTATCGTC 60
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1 GACATAACAGAGCGTCAGAACCATAGGTTCCAAATTTCTCGCTGCCCCCTTCTTATCGTC 60
Query 61 ATCCTCCGACCAAAGT--T-C-C-A--TC-TTC---TGCACAGAGATGTTGATGAAGCAC 109
||| |||||||||||| | | | | || ||| |||||||||||| | ||||||||
Sbjct 61 ATCATCCGACCAAAGTAATCCTCAAGCTCTTTCGTTTGCACAGAGATG-T--TGAAGCAC 117
Query 110 TGTTTTGTGTCTCATAACGCCAATGATCTCTGTTTCTCTTTCTCCAACTCCAAATTCAAT 169
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 118 TGTTTTGTGTCTCATAACGCCAATGATCTCTATTTCTCCTTCTCCAACTCCAAATTCAAT 177
Query 170 CTTGCAAGCTGCCCAAAGAAGCCACCTCGTCTCA-C-C-TGCGTTGTCAATGTTGGATTC 226
|||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 178 CTTGCAAGCTGCCCAAAGAAGCCACCTCGTCTCACCTCGTGCGTTGTCAATGTTGGATTC 237
Query 227 CAAGATATCGCTGAGGTCATCCACAACAAGGTACTCATAGCTGCTGGGACTTCTGCTGTG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 CAAGATATCGCTGAGGTCATCCACAACAAGGTACTCATAGCTGCTGGGACTTCTGCTGTG 297
Query 287 ATTGGGCAGCTCTCAAAGCCATTCACTTCTGTCGTTTTGTATGGGAAAAATCTGGACTTT 346
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 298 ATTGGGCAGCTCTCAAAACCATTCACTTCTGTGGTTTTGTATGGGAAAAATCTGGACTTT 357
Query 347 AGAAGTGTCTTTCAAGCTGGAGGTTTCCCTTCAACACATTCTTCTTCTGTTGTGGCTGCA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGAAGTGTCTTTCAAGCTGGAGGTTTCCCTTCAACACATTCTTCTTCTGTTGTGGCTGCA 417
Query 407 GCAACTGCTATTGCTTTTGAAAGGGGATTTGCTGACTCCATTTTTGGTCTAACTGTGGTT 466
|||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 418 GCAACTGCAATTGCTTTTGAAAGGGGATTTGCTGACTCCATTTTTGGTCTGACGGTGGTT 477
Query 467 TATGCTGGCCTTATCATGTATGATGCCCAGGGGGTGAGGAGAGAAGTTGGAAAACATGCC 526
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 478 TATGCTGGCCTTATCATGTATGATGCCCAGGGGGTGAGGAGAGAAGTTGGGAAACATGCG 537
Query 527 AAAGTGTTGAACAAACTAACAGCTAATGCTCGTAGAAGTGAAGTAATGAGTTTAAAGGGC 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAAGTGTTGAACAAACTAACAGCTAATGCTCGTAGAAGTGAAGTAATGAGTTTAAAGGGC 597
Query 587 AACGAATCTAACAAAGCTTTGACA-TCAGAAGAGATCAGTGAGGAGATTGCTCCTCCATT 645
||||||||||| || || ||| || ||||| ||||||||||| ||| |||||||||||||
Sbjct 598 AACGAATCTAATAAGGCATTG-CAATCAGACGAGATCAGTGAAGAGGTTGCTCCTCCATT 656
Query 646 GAAAGAATCAATAGGACACACTGAAGTTGAAGTCATAGCAGGGGCTTTGTTCGGTTTCTT 705
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 657 GAAAGAATCAATAGGACACACTGAAGTTGAGGTCATAGCAGGGGCTTTGTTCGGTTTCTT 716
Query 706 AGTTACCCTCAGTGTTTATTCCCTGATGTAAAAAAGCTCCCAACTTTATAAAAACTATAT 765
||||||| |||||||||||||||| ||||||||| |||||||||||||||||||| ||||
Sbjct 717 AGTTACCTTCAGTGTTTATTCCCTTATGTAAAAA-GCTCCCAACTTTATAAAAACAATAT 775
Query 766 ATTTTTT-G-TGT-T-GATAAGAAAGAAAGAGAATTT 798
|||||| | ||| | ||||||||||| |||||||||
Sbjct 776 TTTTTTTTGGTGTATTGATAAGAAAGAGAGAGAATTT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29469014841
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5