BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12690.1
Length=2193
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478629 jgi|Araly1|478629|fgenesh2_kg.3__1330__AT3G12690.1 3291 0.0
Ahg495673 jgi|Araly1|495673|fgenesh2_kg.8__1489__AT5G55910.1 176 6e-43
Ahg485660 jgi|Araly1|485660|fgenesh2_kg.5__1652__AT3G52890.2 102 1e-20
> Ahg478629 jgi|Araly1|478629|fgenesh2_kg.3__1330__AT3G12690.1
Length=2102
Score = 3291 bits (1782), Expect = 0.0
Identities = 1984/2081 (95%), Gaps = 16/2081 (1%)
Strand=Plus/Plus
Query 125 CAATTCAACTGGAAACATCAGTTTCTCCGTTCGTCAGAA-CAAGAAGACGA-GGAGAGAC 182
||||||||||||||||||||||||||||||| ||||||| | |||||| || ||||||||
Sbjct 25 CAATTCAACTGGAAACATCAGTTTCTCCGTTGGTCAGAAGC-AGAAGAAGAGGGAGAGAC 83
Query 183 CAGTTTCTTCGGTTTGATTATCCTCAGCTTGTCTTTTACATCAGCAAGGAAGCGTGATCA 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 CAGTTTCTTCGGTTTGATTATCCTCAGCTTGTCTTTTACATCAGCAAGGAAGCGTGATCA 143
Query 243 TCTCAGGTCAAAGGTGAGCTACTTTATAACGGAAGAAGAATCGTCATTAACCTGGAGATA 302
| |||||| |||||| |||||||||||||||||||||||||| | || ||||||||||||
Sbjct 144 TTTCAGGTAAAAGGTTAGCTACTTTATAACGGAAGAAGAATCATTATCAACCTGGAGATA 203
Query 303 TTCCGAAAATGGACTTAGCTTCTAAGAAGAACACAGCTAATGTCGGTTCCAAGGAGATAG 362
||||||| |||||||||||||| |||||||||||||||||||| || ||||||||| |||
Sbjct 204 TTCCGAATATGGACTTAGCTTCCAAGAAGAACACAGCTAATGTTGGCTCCAAGGAGGTAG 263
Query 363 ACCCA---ATAAAACCTAAGTCGCCTCGTTCAAGCCTCTCTCCATTTTCACTTAAACTAG 419
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 264 ACCCATTCGTAAAACCTAAGTCGCCTCGTACAAGCCTCTCTCCATTTTCACTTAAACTAG 323
Query 420 GAGACAATGTTCCCCGAAACCCTCATTTTGATCCCAAGAAGATGGATCCTCTCGTCAAAC 479
||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||
Sbjct 324 GAGACAATGTTCCCCGAAACCCTTATTTCGATCCCAAGAAGATGGATCCTCTCGTTAAAC 383
Query 480 ATCAACCGCCAAAGTCTCTTGAACCTCCCCCCTCGACTAGAGGGACCAATAGCGAGGGTG 539
|||||||| |||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 384 ATCAACCGATAAAGTCTCATGAACCTCCCACCGCGACTAGAGGGACCAATAGCGAGGGTG 443
Query 540 ACTTAAAGCATAACACCTATTCTAGCGATGGTGATAGCTTAGCAATGCGGAAGAATGCTC 599
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 ATTTAAAGCATAACACCTATTCTAGCGATGGTGATAGCTTAGCAATGCGGAAGAATGCTC 503
Query 600 CTAAAAATCTTCATTATGATCCCAAAAAGATTGTTCCTTTGACCACATCTGAAACATACT 659
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 504 CTAAAAATCTTCATTATGATCCCAAAAAGATTGTTCCTTTAACCACATCTGAAACATACT 563
Query 660 CGCCAAGTGCCAGAAATCATCACCACCACAGGACAAAGTCCCCAGACAAGAAGAGAGCCC 719
| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 564 CCCCAAGCGCCAGAAATCATCACCACCACAGGACTAAGTCCCCAGACAACAAGAGAGCCC 623
Query 720 CTAGACATAATGGGGACTATGCCTATGGTGATAACTTGGTAGGTCCATCAGCTCA-ACCT 778
|||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||
Sbjct 624 CTAGACATAATGGGGACTATGCATATGGTGATAACTTGGTGGGTCCATCAGCT-ACACCT 682
Query 779 TTCAAGCCTCACACGGGAGGGGACGTGAGGTGGGATGCCATTAACTCAATCGCTTCTAAA 838
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 683 TTCAAGCCTCACACGGGAGGGGACGTGAGGTGGGATGCTATTAACTCAATCGCTTCAAAA 742
Query 839 GGTCCTCAAATAGGTCTCGACAACTTCAGGCTTCTGAAACGTCTAGGGTATGGGGATATA 898
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GGCCCTCAAATAGGTCTCGACAACTTCAGGCTTCTGAAACGTCTAGGGTATGGGGATATA 802
Query 899 GGCAGCGTTTATCTTGCAGACCTGCGGGGGACAAATGCGGTTTTTGCAATGAAAGTGATG 958
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||
Sbjct 803 GGCAGCGTTTATCTTGCAGACCTGCGAGGGACAAATGCGGTTTTTGCGATGAAGGTGATG 862
Query 959 GATAAGGCCTCCTTGGCCAGCAGAAACAAGTTGCTGAGAGCACAAACCGAAAGAGAAATC 1018
||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 863 GATAAGGCCTCTTTGGCCAGCAGAAACAAGTTGCTGAGGGCACAGACCGAAAGAGAAATC 922
Query 1019 CTATCCCTGCTTGATCATCCTTTCTTGCCGACTCTCTATTCTTACTTTGAGACAGATAAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 923 CTATCCCTGCTTGATCATCCTTTCTTGCCGACTCTCTATTCTTACTTTGAGACCGATAAA 982
Query 1079 TTCTACTGTTTGGTCATGGAGTTCTGCAGCGGCGGAAATCTCCATTCTCTCAGACAGAAG 1138
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 983 TTCTACTGTTTGGTCATGGAGTTCTGCAGCGGCGGAAATCTCCATTCACTCAGACAGAAG 1042
Query 1139 CAACCCAGCAGGCGTTTCACAGAAGAGGCCGCGAGGTTCTACGCGTCTGAAGTGCTATTG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 CAACCCAGCAGGCGTTTCACAGAAGAGGCCGCGAGGTTCTACGCGTCTGAAGTGCTATTG 1102
Query 1199 GCTTTGGAGTATCTACACATGCTGGGGGTTGTGTACAGAGACTTAAAGCCAGAGAACATC 1258
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 GCTTTGGAGTATCTGCACATGCTGGGGGTTGTGTACAGAGACTTAAAGCCAGAGAACATC 1162
Query 1259 CTTGTTCGAGATGAAGGCCACATAATGCTCTCAGACTTCGACCTCTCCCTCCGTTGCACC 1318
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1163 CTTGTTCGAGATGAAGGCCACATAATGCTCTCTGACTTTGACCTCTCCCTCCGTTGCACC 1222
Query 1319 TTTAATCCGACCCTCGTTAAATCCTCCTCAGTCTGCAGCGGGGGAGGTGCTATCCTCAAT 1378
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 1223 TTTAATCCGACCCTCGTTAAGCCCTCCTCAGTCTGCAGCGGAGGAGGTGCTATCCTCAAC 1282
Query 1379 GAGGAGTTTGCTGTCAATGGCTGCATGCATCCATCCGCCTTTCTTCCCCGCCTACTCCCT 1438
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1283 GAGGAGTTTGCTGTCAATGGCTGCATGCATCCATCCGCCTTTCTCCCCCGCCTCCTCCCT 1342
Query 1439 TCCAAGAAAACCCGTAAAGCGAAATCAGACTCTGGTCTCGGTGGCCTCTCTATGCCAGAG 1498
|||||||||||||||||||| |||||||| || || |||||||||||||||||||| |||
Sbjct 1343 TCCAAGAAAACCCGTAAAGCCAAATCAGATTCCGGCCTCGGTGGCCTCTCTATGCCGGAG 1402
Query 1499 CTCATGGCAGAGCCAACAGATGTGCGGTCAATGTCCTTTGTGGGCACACACGAGTACCTA 1558
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 CTCATGGCAGAGCCAACAGATGTGCGGTCAATGTCCTTTGTGGGCACACACGAGTACCTG 1462
Query 1559 GCTCCAGAGATCATACGTGGCGAGGGACATGGCAGCGCTGTGGACTGGTGGACATTCGGG 1618
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 GCTCCAGAGATCATTCGTGGCGAGGGACATGGCAGCGCTGTGGACTGGTGGACATTCGGG 1522
Query 1619 ATCTTCCTTTATGAGCTCCTCCATGGGACCACCCCGTTCAAGGGGCAGGGAAACAGAGCC 1678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1523 ATCTTCCTTTATGAGCTCCTCCATGGGACCACCCCGTTCAAGGGGCAGGGAAACAGAGCC 1582
Query 1679 ACGTTGCACAATGTGGTGGGTCAGCCGCTGAAGTTCCCGGATACCCCGCATGTGAGCTCA 1738
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1583 ACGCTGCACAATGTAGTGGGTCAGCCGCTGAAGTTCCCGGATACCCCGCATGTGAGCTCA 1642
Query 1739 GCGGCACGTGATCTCATCCGCGGACTACTAGTGAAGGATCCACACAGAAGGATCGCTTAC 1798
|||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||
Sbjct 1643 GCGGCACGTGATCTCATCCGTGGACTTCTAGTGAAGGATCCTCACAGAAGGATCGCTTAC 1702
Query 1799 ACGAGGGGGGCCACAGAGATAAAGCAACACCCTTTCTTTGAAGGAGTGAATTGGGCTCTA 1858
||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACGCGGGGAGCCACAGAGATAAAGCAACACCCTTTCTTTGAAGGAGTGAATTGGGCTCTA 1762
Query 1859 GTTCGTAGTGCTGCCCCACCTCACATTCCAGACCCCGTGGACTTGGGACCGTACGCGGCC 1918
|| ||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1763 GTGCGTAGTGCTTCCCCGCCTCACATTCCCGACCCCGTGGACTTGGGACCGTACGCGGCC 1822
Query 1919 GCTAGAGGTAAGACCAAGAGCCATGGAGGTGGTGATCACTGTAACTCAATGAAGCCGGAG 1978
|||||||| ||| | ||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 1823 GCTAGAGGGAAGGCAAAGAGCCATGGAGTTGGTGATCACTGTAACTCAATTAAGCCGGAG 1882
Query 1979 CCTCTGGTCGCCTGTGCTGCTGGTCCCACGGATGATACGGCGTATATAGATTTCGAGTAC 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 CCTCTGGTCGCCTGTGCTGCTGGTCCCACGGATGATACGGCGTATATAGATTTCGAGTAC 1942
Query 2039 TTTTAGACTTAAAACTCCACAAGCTGAAAGTTTCGATATGTTTGTTTTTGTTCATATTCT 2098
||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1943 TTTTAGACTTAAA-CTCCACAAGCTGAAAGTTTCTATATGTTTCTTTTTGTTCATATTCT 2001
Query 2099 TTAATTTTGG-CGAATACAAATTGTGATTTATAAAAGAAGAACAGATGACTTGGTTTAAG 2157
|||||||| | ||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 2002 TTAATTTTTGACGAATACAAATTGTGATTTATAAAAGAAGAACAAATGACTTGATTTAAG 2061
Query 2158 AGACTAA-A----A-GAGTTTTACTAAAAGAGTTAAAGCAG 2192
|||| || | | |||||||||||| |||||||||||||
Sbjct 2062 AGACAAAGATTCCATGAGTTTTACTAATAGAGTTAAAGCAG 2102
> Ahg495673 jgi|Araly1|495673|fgenesh2_kg.8__1489__AT5G55910.1
Length=2055
Score = 176 bits (95), Expect = 6e-43
Identities = 290/382 (76%), Gaps = 22/382 (6%)
Strand=Plus/Plus
Query 1493 CCAGAGCTCATGGCAGAGCCAACAGATGTGCGGTCAATGTCCTTTGTGGGCACACACGAG 1552
||||| ||| | |||||||| |||| | || || ||||| ||||| ||||||||||||
Sbjct 1342 CCAGAACTCGTTGCAGAGCCCACAGGCGCCCGTTCGATGTCTTTTGTTGGCACACACGAG 1401
Query 1553 TACCTAGCTCCAGAGATCATAC-GTGGCGAGGGACATGGCAGCGCTGTGGACTGGTGGAC 1611
||| ||||||||||||| || | || || |||||||| ||||| || || ||||||||
Sbjct 1402 TACTTAGCTCCAGAGATTAT-CAAAGGTGAAGGACATGGAAGCGCGGTTGATTGGTGGAC 1460
Query 1612 ATTCGGGATCTTCCTTTATGAGCTCCTCCATGGGACCACCCCG-TTCAAGGGGCAGGGAA 1670
|| |||||||| |||||||| | | ||| | || ||| || ||||| | ||||
Sbjct 1461 TTTTGGGATCTTTCTTTATGAATTATTGTTTGGTAAAACACCGTTTAAAGGGTC-TGGAA 1519
Query 1671 A-CAGAGCCACGTTGC-ACAATGTGGTGGGTCAGCCGCTGAAG-TTCCCGG-ATAC-CCC 1725
| | |||| ||| | | ||||||||| |||||||| ||| || ||||||| || | ||
Sbjct 1520 ATC-GAGCTACGCT-CTTCAATGTGGTTGGTCAGCCTCTG-AGATTCCCGGAAT-CTCCA 1575
Query 1726 GCATGTGAGCTCAGCGGC-ACGTGATCTCATCCGCG-GACTACTAGTGAAGGATCCAC-A 1782
| ||| |||| || || | | ||| | || | | | | || |||||||| |||| |
Sbjct 1576 G-TTGTTAGCTTTGCAGCTA-GGGATTTGATAAG-GAGTTTGCTTGTGAAGGAGCCACAA 1632
Query 1783 CAGAAGGA-TCGCTTACACGAGGGGGGCCACAGAGATAAAGCAACACCCTTTCTTTGAAG 1841
|| | || | ||||| | | | || || ||||||||||||||||| |||||||||||||
Sbjct 1633 CA-TA-GATTAGCTTATAAGCGTGGAGCAACAGAGATAAAGCAACATCCTTTCTTTGAAG 1690
Query 1842 GAGTGAATTGGGCTCTAGTTCG 1863
|||||||||||||||| |||||
Sbjct 1691 GAGTGAATTGGGCTCTGGTTCG 1712
> Ahg485660 jgi|Araly1|485660|fgenesh2_kg.5__1652__AT3G52890.2
Length=3179
Score = 102 bits (55), Expect = 1e-20
Identities = 115/143 (80%), Gaps = 8/143 (6%)
Strand=Plus/Plus
Query 1497 AGCTCATGGCAGAGCCAACAGATGTGCGGT-CAATGTCCTTTGTGGGCACACACGAGTAC 1555
||||| |||| || ||||| || | | | |||| ||||||||||| ||||||||||||
Sbjct 2570 AGCTCGTGGCTGAACCAACCGAAGCAAGATCCAAT-TCCTTTGTGGGAACACACGAGTAC 2628
Query 1556 CTAGCTCCAGAGATCAT-ACGTGGCGAGGGACATGGCAGC-GCTGTGGACTGGTGGACAT 1613
||||||||||||||||| | || || |||||||| || || || ||||||||||| |
Sbjct 2629 CTAGCTCCAGAGATCATCAAA-GGAGAAGGACATGGT-GCTGCGGTTGACTGGTGGACTT 2686
Query 1614 TCGGGAT-CTTCCTTTATGAGCT 1635
||||| | || |||||| |||||
Sbjct 2687 TCGGGGTTCT-CCTTTACGAGCT 2708
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82541560915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5