BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12700.1
Length=1543
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478632 jgi|Araly1|478632|fgenesh2_kg.3__1333__AT3G12700.1 1941 0.0
> Ahg478632 jgi|Araly1|478632|fgenesh2_kg.3__1333__AT3G12700.1
Length=1515
Score = 1941 bits (1051), Expect = 0.0
Identities = 1379/1530 (90%), Gaps = 52/1530 (3%)
Strand=Plus/Plus
Query 47 GAGAGAAAGGCGTTTCATCAATGTATATAAATACTCTGTTTTGGAAACAGAACCCA-ACA 105
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |
Sbjct 1 GAGAGAAAGGCGTTTCATCAATGTCTATAAATACTCTGTTTTGGAAACAGAACCCAGA-A 59
Query 106 GGGGACaaaaaaaaT-CA-AGAA-GAAAAAATGCAGAAGACATTGCTCTCATGTCTCATC 162
|||| |||||| || |||| || | || | | | || |||| |||||||||
Sbjct 60 GGGG-----AAAAATGCAGAGAATCAAGACAT-C-GCTCTC-GTG-TCTC-TGTCTCATC 109
Query 163 ACGACGCTCCTCCTAATCACCGTCGCAGATTCCATGAAAGACACCTCGGTGCGGCTAAAA 222
||||||||||||||| |||||| ||||||||||| | ||||||| ||||||||||||||
Sbjct 110 ACGACGCTCCTCCTACTCACCGCCGCAGATTCCACGGAAGACACGGCGGTGCGGCTAAAA 169
Query 223 TTAGCGCACAGGGACACTCTCTTGCCGAAACCTCTCAGCCGCATTGAGGACGTTATCGGC 282
||||| ||| |||||||||||| |||||| ||||||||||||||||||||| |||||||
Sbjct 170 TTAGCACACCGGGACACTCTCTGGCCGAATCCTCTCAGCCGCATTGAGGACATTATCGGT 229
Query 283 GCCGACCAGAAGCGTCATAGTTTGATATCTCGGAAGCGTAACTCCACAGTAGGAGTGAAA 342
||||||||||||||||||||||||||||||||||| ||||| | || || |||||| |||
Sbjct 230 GCCGACCAGAAGCGTCATAGTTTGATATCTCGGAAACGTAAGTTCAAAGGAGGAGTTAAA 289
Query 343 ATGGATTTGGGATCAGGGATTGATTACGGAACGGCGCAGTATTTCACGGAGATTAGAGTT 402
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 290 ATGGATTTGGGATCAGGGATTGATTACGGAACGGCGCAGTATTTAACGGAGGTTAGAGTT 349
Query 403 GGAACTCCGGCGAAGAAGTTCAGAGTGGTGGTTGATACAGGAAGCGAGCTTACTTGGGTG 462
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 350 GGAACTCCGGCGAAGAAGTTCAGAGTAGTGGTTGATACAGGAAGCGAGCTTACTTGGGTG 409
Query 463 AATTGTAGATACCGTGCGAGAGGC------AAA---GACAATCGGAGAGTGTTTAGAGCT 513
|||||||||||||||| ||||||| ||| || |||||||||||||||||||||
Sbjct 410 AATTGTAGATACCGTGGGAGAGGCAAAGGTAAAGTTGAGAATCGGAGAGTGTTTAGAGCT 469
Query 514 GACGAATCAAAGAGCTTTAAGACCGTTGGATGTTTAACTCAGACTTGTAAAGTTGATCTG 573
|| ||||| ||||| ||||| || |||||||| || ||||||||||||||||||||| ||
Sbjct 470 GAAGAATCTAAGAGTTTTAAAACTGTTGGATGCTTCACTCAGACTTGTAAAGTTGATTTG 529
Query 574 ATGAATCTCTTCTCACTCACTACTTGTCCTACTCCTTCCACTCCTTGCTCCTATGATTAC 633
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 530 ATGAATCTTTTCTCACTCTCTACTTGTCCTACTCCTTCCACTCCTTGCTCCTATGATTAC 589
Query 634 AGATATGCAGATGGGTCAGCAGCACAAGGCGTATTCGCAAAGGAGACTATCACAGTTGGT 693
|||||||| |||||||||||||| |||||| ||||||| |||||||||||||||||||||
Sbjct 590 AGATATGCGGATGGGTCAGCAGCGCAAGGCATATTCGCGAAGGAGACTATCACAGTTGGT 649
Query 694 CTCACTAATGGTCGTATGGCTAGACTCC-CTGGTCACCTCATTGGTTGTAGTAGTTCCTT 752
|||||||||||||||| ||||||||||| | |||| |||||||||||||||||| || ||
Sbjct 650 CTCACTAATGGTCGTAAGGCTAGACTCCGC-GGTCTCCTCATTGGTTGTAGTAGCTCATT 708
Query 753 TACAGGACAGAGCTTCCAAGGAGCCGATGGGGTTCTTGGTTTAGCCTTTAGCGATTTCTC 812
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TAGTGGACAGAGCTTCCAAGGAGCCGATGGGGTTCTTGGTTTAGCCTTTAGCGATTTCTC 768
Query 813 CTTCACTTCCACAGCCACTAGTCTCTATGGTGCCAAATTTTCATACTGCCTTGTTGACCA 872
|| |||||||||||||||||||||| ||||||||||||||| |||||||| ||||| ||
Sbjct 769 TTTTACTTCCACAGCCACTAGTCTCTTTGGTGCCAAATTTTCCTACTGCCTCGTTGATCA 828
Query 873 TCTTTCCAACAAAAACGTCTCCAACTATCTCATCTTCGG--------C-TCCTCCAGATC 923
|| ||||||||||||||||||||||||||||||||||| | ||||||| ||
Sbjct 829 CCTCTCCAACAAAAACGTCTCCAACTATCTCATCTTCGGTTCTTCCTCTTCCTCCACCTC 888
Query 924 CACCAAAACCGCCTTCC--GACGAACCACTCCGCTTGATCTCACTCGCATCCCACCCTTC 981
||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||
Sbjct 889 CACCAAAACCGCC--CCGGGACGAACCACGCCGCTTGATCTCACTCTCATCCCACCCTTC 946
Query 982 TACGCAATCAACGTCATTGGAATCTCCCTCGGATACGACATGCTTGATATCCCCTCGCAA 1041
|||||||| |||||||||||||||||| ||||| || ||||||| ||||||||| |||||
Sbjct 947 TACGCAATAAACGTCATTGGAATCTCCATCGGAGACAACATGCTCGATATCCCCACGCAA 1006
Query 1042 GTATGGGACGCAACTTCCGGTGGTGGGACTATCTTAGACTCTGGAACCAGCCTCACGTTA 1101
||||||||||||||| ||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 1007 GTATGGGACGCAACTACCGGTGGTGGGACTATCTTGGACTCAGGAACTAGCCTCACGTTA 1066
Query 1102 TTGGCTGACGCCGCGTACAAACAGGTGGTTACAGGGCTCGCACGCTACCTTGTTGAGTTG 1161
|||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||| ||
Sbjct 1067 TTGGCTGAAGCCGCGTACAAACCGGTGGTTACGGGGCTCGCACGTTACCTTGTTGAGCTG 1126
Query 1162 AAAAGAGTCAAACCAGAAGGAGTACCAATAGAGTACTGTTTTAGTTTCACTTCCGGATTT 1221
||||||||||| ||||||||| ||||||| |||||||||||||||| ||| ||||| ||
Sbjct 1127 AAAAGAGTCAAGCCAGAAGGAATACCAATTGAGTACTGTTTTAGTTCCACGTCCGGGTTC 1186
Query 1222 AACGTGAGCAAGTTACCGCAGCTGACATTTCATTTAAAAGGCGGTGCACGATTTGAGCCA 1281
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1187 AACGAGAGCAAGTTACCGCAGCTGACGTTTCATTTAAAAGGCGGTGCACGATTTGAGCCG 1246
Query 1282 CATCGTAAAAGTTACCTAGTAGATGCAGCGCCTGGAGTCAAGTGTTTAGGATTTGTGTCG 1341
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1247 CATCGTAAAAGTTACCTAGTAGATGCAGCGCCTGGAGTCAAGTGTTTAGGATTTATGTCG 1306
Query 1342 GCTGGAACGCCGGCGACTAATGTGATCGGTAATATAATGCAGCAGAATTATTTGTGGGAG 1401
|| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1307 GCGGGAACGCCGGCGACTAATGTGGTCGGGAATATAATGCAGCAGAATTATTTGTGGGAG 1366
Query 1402 TTTGATCTCATGGCCTCAACTTTGTCTTTTGCTCCCTCTGCTTGCACTTAGCTGTCTTGT 1461
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1367 TTTGATCTAATGGCCTCAACTTTGTCTTTTGCTCCCTCTACTTGCACTTAGCTGTCTTGT 1426
Query 1462 CCATCTCTCGT--GTTTATTATTA-TT-GATTTG-TTCGAATAT-T-TAT-T---GTTT- 1509
||||||||| | ||||||||||| || |||| | || |||||| | ||| | ||||
Sbjct 1427 CCATCTCTCTTCTGTTTATTATTACTTTGATT-GATTGGAATATATATATATATTGTTTT 1485
Query 1510 GCTAGTGAATGAATAAAAAACATGTTTGTT 1539
| ||||||| ||||||||||||||||||||
Sbjct 1486 GTTAGTGAAAGAATAAAAAACATGTTTGTT 1515
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57782901665
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5