BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12710.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478633 jgi|Araly1|478633|fgenesh2_kg.3__1334__AT3G12710.1 2060 0.0
Ahg948624 jgi|Araly1|948624|scaffold_800511.1 143 4e-33
> Ahg478633 jgi|Araly1|478633|fgenesh2_kg.3__1334__AT3G12710.1
Length=1332
Score = 2060 bits (1115), Expect = 0.0
Identities = 1265/1335 (95%), Gaps = 20/1335 (1%)
Strand=Plus/Plus
Query 18 TTTCAATTCTCTCTGCCTCTCATAG-T--TA-ATATATATACGTTCACAATCACttctct 73
|||||||||||||||||||||| || | || |||||||||||| |||||||||||||||
Sbjct 1 TTTCAATTCTCTCTGCCTCTCACAGTTGATATATATATATACGTCCACAATCACTTCTCT 60
Query 74 tctctatttcttattcattatctcaaccctctctctctctctctcAGTACAACTTAT--- 130
||||||||||| |||||||||||||||||| ||||| ||||||| | ||||||||||
Sbjct 61 TCTCTATTTCTCATTCATTATCTCAACCCT-TCTCTATCTCTCTTACTACAACTTATCAG 119
Query 131 CATCCATCACCATATATAGAGAATATGAGCAAAACGGAAGCAATCAGCTTGACCAAAAGG 190
|||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 120 CATCCATCACCAAATATAGAGAATATGAGCAAAACCGAAGCAATAAGCTTGACCAAAAGG 179
Query 191 GGAATGTTGCCGCCAAGTAGTTGCAATAGCCTAATGGACCGCTCTGAGTCCCTTAAGAGG 250
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 180 GGAATGTTGCCGCCAAGTAGTTGCAGTAGCCTAATGGACCGCTCTGAGTCCCTCAAGAGG 239
Query 251 GACAGTGTGATGGGCAATGGTGCAGCCAAAGTGAGAGGAAGCTTGGAGCGCAAGAAATCA 310
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACAGTGTGATGAGCAATGGAGCAGCCAAAGTGAGAGGAAGCTTGGAGCGCAAGAAATCA 299
Query 311 AAGAGTTTTAAGGAAGGAGATAGTTATTCTTCGTGGCTCATAACGGAGGCTCCTGGGAGT 370
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 300 AAGAGTTTTAAGGAAGGAGAAAGCTATTCTTCTTGGCTCATAACGGAGGCTCCTGGGAGT 359
Query 371 ATAGCCGCCGTGAGGAGAGAGCAAGTGGCGGCACAACAAGCACTAAGGAAACTAAAGATT 430
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 ATAGCCGCCGTGAGGAGAGAGCAAGTGGCGGCACAACAAGCCCTAAGGAAACTAAAGATT 419
Query 431 GCTCATTACGGTAGATCCAAATCAACCATTAATTTCACTTCTTCCAAAGTCGTCCCTCTT 490
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GCTCATTACGGCAGATCCAAATCAACCATTAATTTCACTTCTTCCAAAGTCGTCCCTCTT 479
Query 491 CTTAACCCTAACCCTAACCCTCATCCTCAGAGATGCAGCTTCCTCACCCCCACTTCTGAT 550
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CTTCACCCTAACCCTAACCCTCATCCTCAGAGATGCAGCTTCCTCACCCCCACTTCTGAT 539
Query 551 CCTATTTACGTGGCCTACCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAGACG 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 CCTATTTACGTGGCCTACCATGATGAAGAATGGGGAGTTCCAGTTCATGATGACAAGACG 599
Query 611 TTGTTCGAACTGCTGACCCTAAGCGGCGCACAAGTAGGCTCCGATTGGACTTCAACCTTG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGTTCGAACTGCTGACCCTAAGCGGCGCACAAGTAGGCTCCGATTGGACTTCAACCTTG 659
Query 671 AGAAAACGCCATGACTATAGGAAGGCCTTTATGGAGTTTGAGGCGGAAG-TGGTTGCCAA 729
|||||||| ||||||||||||||||| |||||||||||||||||||||| || || ||||
Sbjct 660 AGAAAACGTCATGACTATAGGAAGGCTTTTATGGAGTTTGAGGCGGAAGCTG-TTACCAA 718
Query 730 ACTCACCGAGAAAGAGATGAATGCAATAAGCATCGAATACAAGATAGAGATGAGCAAAGT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACTCACCGAGAAAGAGATGAATGCAATAAGCATCGAATACAAGATAGAGATGAGCAAAGT 778
Query 790 GAGAGGTGTTGTGGAAAACGCTAAAAAGATCGTAGAGATCAAGAAAGCGTTTGTGTCATT 849
||||||||||||||| || |||| |||||| || ||||||||||||||||||| ||||||
Sbjct 779 GAGAGGTGTTGTGGAGAATGCTACAAAGATTGTCGAGATCAAGAAAGCGTTTGGGTCATT 838
Query 850 AGAGAAATACCTTTGGGGATTTGTGAACCACAAACCAATCTCCACGAACTACAAGCTTGG 909
||||||||||||||||||||||||||||||||| || |||||||||||||||||| | ||
Sbjct 839 AGAGAAATACCTTTGGGGATTTGTGAACCACAAGCCCATCTCCACGAACTACAAGATGGG 898
Query 910 ACACAAGATTCCGGTCAAGACATCGAAGTCGGAGAGCATCAGCAAAGACATGGTTCGTCG 969
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 899 ACACAAGATTCCGGTCAAGACATCGAAGTCGGAGAGCATAAGCAAAGACATGGTTCGTAG 958
Query 970 AGGCTTCCGGTTCGTGGGTCCCACTGTGGTTCACTCATTCATGCAAGCCGCTGGTCTTAC 1029
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AGGCTTCCGGTTTGTGGGTCCCACTGTGGTTCACTCATTCATGCAAGCCGCTGGTCTTAC 1018
Query 1030 AAACGACCACTTGATCACTTGCTGTCGCCACGCTCCTTGCACTCTCCTTGCAACCAATCC 1089
||||||||||| |||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 1019 TAACGACCACTTAATCACTTGCTGTCGCCACACTCCTTGCACTATCCTTGCTACCAATCC 1078
Query 1090 CTAATTATTAATTTTTAATTTAATTGAAAGTGGTGTTTTTATTTAACTTTCGAGTGCAAA 1149
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1079 CTAATTATTAATTTTTAATTTTATTGAAAGTGTTGTTTTTATTTAACTTTCGAGTGCAAA 1138
Query 1150 ATGTAGGTTTAGGAGAAAAGAGATTGCAGTTTTTTA--AAATTGGCAATGTAAGATAAAC 1207
|||||||| | |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1139 ATGTAGGTGTGGGAGAAAAGAGATTGCAGTTTTTTTTTAAATTGGCAATGTAAGATAAAT 1198
Query 1208 CAGCTGGTTT-GAtttttttCTTGTG--TGTG----AGGTGTTTAAAATCACATGTATAA 1260
||||||||| | ||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1199 TAGCTGGTTTTG-TTTTTTTCTTGTGCGTGTGTGTGAGGTGTTTAAAATCACATGTATAA 1257
Query 1261 TGGTTTTTGATGTATGTGTGGTGTGGCAAATTGAAATAGTAATTGATTTTCATTTGATTT 1320
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 1258 TGGTTTTTGATGTATGTGTGGTGTGACAAATTGAAATAGTAATTGATTTTCATTGGATTT 1317
Query 1321 ATCTATTGTTCAAAA 1335
|||| ||||||||||
Sbjct 1318 ATCTGTTGTTCAAAA 1332
> Ahg948624 jgi|Araly1|948624|scaffold_800511.1
Length=1105
Score = 143 bits (77), Expect = 4e-33
Identities = 169/213 (79%), Gaps = 8/213 (4%)
Strand=Plus/Plus
Query 839 TTTGTGTCATT-AGAGAAATACCTTTGGGGATTTGTGAACCACAAACCAATCTCCACGAA 897
|||| |||||| | | |||||| ||||||| ||| |||| ||||||| || |||| ||
Sbjct 834 TTTGGGTCATTCA-ACAAATACATTTGGGGGTTTATGAAATACAAACCGGTCACCACAAA 892
Query 898 CTACA-AGCTTGGACACAAGATTCCGGTCAAGACATCGAAGTCGGAGAGC-ATCAGCAAA 955
|||| | | || || ||||| ||||| ||||||||||| ||||||| | || ||||||
Sbjct 893 ATACACATCATGC-CAAAAGATACCGGTTAAGACATCGAAATCGGAGA-CTATAAGCAAA 950
Query 956 GACATGGTTCGTCGAGGCTTCCGGTTCGTGGGTCCCACTGTGGTTCACTCATTCATGCAA 1015
|||||||||||||| || || | ||||| ||||| || || | || || || ||||||
Sbjct 951 GACATGGTTCGTCGTGGGTTTAGATTCGTTGGTCCAACGGTTCTACATTCGTTAATGCAA 1010
Query 1016 GCCGCTGGTCTTA-CAAACGACCACTTGATCAC 1047
||||| ||| ||| | |||||||||||||||||
Sbjct 1011 GCCGCCGGT-TTAACCAACGACCACTTGATCAC 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5