BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12720.1
Length=1108
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928995 jgi|Araly1|928995|scaffold_301452.1 1074 0.0
> Ahg928995 jgi|Araly1|928995|scaffold_301452.1
Length=928
Score = 1074 bits (581), Expect = 0.0
Identities = 638/666 (96%), Gaps = 2/666 (0%)
Strand=Plus/Plus
Query 65 CTTGTAATATATAAGTTAGGAAGATGAGAGAGAAGTGGGAAATGAAAAGAGATGAAATGG 124
|||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1 CTTGTAATATATAAACCAGGAAGATGAGAGAGAAATGGGAAACGAAAAGAGATGAAATGG 60
Query 125 GACATCGATGTTGTGGAAAACACAAAGTGAAGAGAGGTCTTTGGTCTCCAGAGGAAGACG 184
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 61 GACATCGATGCTGTGGAAAACACAAAGTGAAGAGAGGGCTTTGGTCTCCAGAGGAAGACG 120
Query 185 AGAAGCTTCTTCGTTATATCACCACTCATGGTCATCCTAGTTGGAGTTCCGTTCCAAAGC 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGAAGCTTCTTCGTTATATCACCACTCATGGTCATCCTAGTTGGAGTTCCGTTCCAAAGC 180
Query 245 TTGCCGGGTTGCAGAGATGTGGGAAGAGTTGCAGATTAAGGTGGATAAACTATCTAAGGC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCCGGGTTGCAGAGATGTGGGAAGAGTTGCAGATTAAGGTGGATAAACTATCTAAGGC 240
Query 305 CTGATCTGAGGAGAGGTTCGTTTAATGAGGAAGAAGAGCAGATTATCATCGACGTACATC 364
||||||||| |||||| ||||||| | ||| |||||||||||||||||||| |||||||
Sbjct 241 CTGATCTGAAAAGAGGTACGTTTAACGCGGAGGAAGAGCAGATTATCATCGATGTACATC 300
Query 365 GTATTCTTGGTAACAAATGGGCTCAGATTGCTAAGCACTTACCTGGACGCACTGATAATG 424
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 GTATTCTCGGTAACAAATGGGCTCAAATTGCTAAGCACTTACCTGGACGCACTGATAATG 360
Query 425 AAGTCAAGAACTTTTGGAACTCATGCATTAAGAAGAAACTTCTTTCTCAAGGCTTAGATC 484
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 361 AAGTCAAGAACTTTTGGAACTCATGCATTAAGAAGAAGCTTCTTTCTCAAGGCTTAGATC 420
Query 485 CTTCTACACATAATCTTATGCCTTCACACAAAAGATCTTCTTCTTCAAA-CAATAATAAT 543
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 421 CTTCTACACATAATCTTATGCCTTCACACAAAAGATCTTCTTCTTCTAATCA-TAATAAT 479
Query 544 ATCCCCAAGCCAAACAAAACGACGTCCATCATGAAGAACCCTACTGATCTTGATCAATCA 603
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATTCCCAAGCCAAACAAAACGACGTCCATCATGAAGAACCCTACTGATCTTGATCAATCA 539
Query 604 ACCACTGCTTTTTCAATCACAAACATCAATCCACCCACTTCCACTAAACCAAACAAACTT 663
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 540 ACCACTGCTTTTTTAATCACAAACATCAATCCTCCCACTTCCACTAAACCAAACAGACTT 599
Query 664 AAATCTCCTAACCAGACTACAATCCCATCTCAAACCGTGATCCCTATCAATGATAACATG 723
|||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||
Sbjct 600 AAATCTCCCAACCAGACTCCAATCCCATCTCAAACCATGATCCCTATCAATGATACCATG 659
Query 724 TCAAGT 729
||||||
Sbjct 660 TCAAGT 665
Score = 501 bits (271), Expect = 4e-141
Identities = 292/302 (97%), Gaps = 2/302 (1%)
Strand=Plus/Plus
Query 731 CTCAAACCATGATCCCTATCAATGATCCCATGTCAAGTCTTTTAGATGATGAGAATATGA 790
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 628 CTCAAACCATGATCCCTATCAATGATACCATGTCAAGTCTTTTAGATGATGAGAATATGA 687
Query 791 TTCCTCACTGGTCAGATGTTGATGGAATGGCGATCCACGAAGCTCCGATGTTGCCTAG-T 849
||||| | ||||||||||||||||||| ||||||||||||||||||||||||||| | |
Sbjct 688 TTCCTAATTGGTCAGATGTTGATGGAACGGCGATCCACGAAGCTCCGATGTTGCC-GGCT 746
Query 850 GATAAGGCAGTAGTGGGAGTGGATGATGATGATCTCAACATGGACATTTTGTTTAACACT 909
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 747 GATAAGGCAGTAGTGGGAGTGGATGATGATGATCTCAACATGGACATTTTGTTTAATACT 806
Query 910 CCTTCTTCTTCTGCTTTTGATCCTGATTTTGCTTCCATTTTCTCCTCTGCAATGTCTATC 969
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 807 CCCTCTTCTTCTGCTTTTGATCCTGATTTTGCTTCCATTTTCTCCTCTGCAATGTCTATC 866
Query 970 GATTTCAATCCCATGGATGATCTTGGCAGCTGGACCTTTTAGCTTTTACTCTACAATATT 1029
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 867 GATTTCAACCCCATGGATGATCTTGGCAGCTGGACCTTTTAGCTTTTACTCTACAATATT 926
Query 1030 TT 1031
||
Sbjct 927 TT 928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41287119111
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5