BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12730.1
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928996 jgi|Araly1|928996|scaffold_301453.1 1177 0.0
> Ahg928996 jgi|Araly1|928996|scaffold_301453.1
Length=748
Score = 1177 bits (637), Expect = 0.0
Identities = 709/744 (95%), Gaps = 3/744 (0%)
Strand=Plus/Plus
Query 236 GCATTTAGTACTTTGTTAGTTAAATGATGCAGTCGAGAGAGGAGATCAGAGATGATTCAT 295
||||||| | |||||||||| |||||||||||||||||| ||||| |||||||| ||||
Sbjct 1 GCATTTA--A-TTTGTTAGTTGAATGATGCAGTCGAGAGATGAGATGAGAGATGAGTCAT 57
Query 296 CATCAGGTCTCGTCCTCACCACTGACCCTAAGCCTCGCCTTCGCTGGACCACAGAGCTTC 355
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 58 CATCAGGTCTCGTCCTCACCACTGACCCTAAGCCTCGCCTTCGCTGGACCACTGAGCTTC 117
Query 356 ACGAACGCTTCGTTGACGCCGTCACTCACCTTGGAGGCCCTGAAAAGGCTACACCAAAGA 415
| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 118 ATGAACGCTTCGTTGACGCCGTCTCTCACCTTGGAGGCCCTGACAAGGCTACACCAAAGA 177
Query 416 CAATAATGAGAGTTATGGGTGTGAAGGGTCTCACTCTTTATCATCTCAAGAGCCATCTCC 475
| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 178 CGATAATGAGAGTAATGGGTGTGAAGGGTCTCACGCTTTATCATCTCAAGAGCCATCTCC 237
Query 476 AGAAGTTCAGACTTGGGAAGCAGCCTCACAAGGAGCATAGTCAAAATCACTCCATTTGTA 535
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 238 AGAAGTTCAGACTTGGAAAGCAGCCTCACAAGGAGCATAGTCAAAATCACTCCATTAGTA 297
Query 536 TTAGAGATACAAATAGAGCTTCCATGTTGGATCTTCGAAGGAATGCTGTTTTCACGACTA 595
||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 298 TTAGAGACACAAATAGAGCTTCCATGTTGGATCTTCGAAGGAATGGTGTATTCACGACTA 357
Query 596 GTCCGCTCATCATTGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAAAGAAGGATAG 655
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GTCCGCTGATCATTGGTCGCAATATGAACGAGATGCAAATGGAGGTGCAAAGAAGGATAG 417
Query 656 AGGAAGAGGTAGTAATAGAAAGACAGGTGAATCAAAGGATAGCGGCACAAGGGAAATACA 715
||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 418 AGGAAGAAGTAGAAATAGAAAGACAGGTGAACCAAAGGATAGAAGCACAAGGGAAATACA 477
Query 716 TGGAGAGCATGTTAGAGAAAGCATGTGAAACCCAAGAAGCAAGCCTCACTAAAGACTACT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TGGAGAGCATGTTAGAGAAAGCATGTGAAACCCAAGAAGCAAGCCTCACTAAAGACTACT 537
Query 776 CTACTCTATTTTTCGACCGCACCAATATTTGTAACAACACATCGTCCATCCCAATCCCAT 835
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 538 CTACTCTCTTTTTCGACCGCACCAATATTTGTAACAGCACATCGTCCATCCCAATCCCAT 597
Query 836 GGTTCGAGGATCATTTTCCTTCCTCTTCCTCCATGGACTCTACGTTGATTCTCCCCGACA 895
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 598 GGTTCGAGGATCATTTTCCTTCCTCTTCCTCCATGGACTCTGCGTTGATTCTCCCTGACA 657
Query 896 TCAATTCCAACTTCTCCCTACAAGATTCTAGGAGTTCCATCACTAAGGGCCGTACGGTTT 955
||||||||||||||||||| ||||||||| ||||||| ||||| ||||| ||||||||||
Sbjct 658 TCAATTCCAACTTCTCCCTGCAAGATTCTTGGAGTTCGATCACAAAGGGTCGTACGGTTT 717
Query 956 GTCTCGGTTAGAGAAGAGATATAT 979
||||||||||||||||| ||||||
Sbjct 718 GTCTCGGTTAGAGAAGACATATAT 741
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42049577451
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5