BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12740.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478636 jgi|Araly1|478636|fgenesh2_kg.3__1337__AT3G12740.1 2093 0.0
Ahg924165 jgi|Araly1|924165|scaffold_105446.1 1033 0.0
> Ahg478636 jgi|Araly1|478636|fgenesh2_kg.3__1337__AT3G12740.1
Length=1451
Score = 2093 bits (1133), Expect = 0.0
Identities = 1351/1449 (93%), Gaps = 43/1449 (3%)
Strand=Plus/Plus
Query 51 ttcttcttcttcttctAGATCGAGAGGGACATGGGTCTTACCAGCCGCCGTTGACGACTA 110
||| ||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 35 TTC-TCTTCTTCTTCTAGATC--GATGGAAATGGGTCTTACCAGCCGCCGTTGACGACTA 91
Query 111 CGACGACCAttctcttcctcttcatct-tctctccttctgcttttctctatttcctattc 169
|||||||||||||||||||| | || | | |||||||||||||||||||||||| |
Sbjct 92 CGACGACCATTCTCTTCCTC-TAATATAGC-CTCCTTCTGCTTTTCTCTATTTCC---T- 145
Query 170 tctccAAATTCACCATTTCCTTCCACCACTCAGAGATCTCCCTTTCTTATTAGCTATGTC 229
||||| | ||| || |||||| ||||||||| ||| || | | |||||||
Sbjct 146 TCTCC-----C-CCA-----TT-CACCACACAGAGATCT-CCTATC--A-T--CTATGTC 187
Query 230 TTCTTCTAACACGCCATCTTCTA--G-CGCCGCCGCTGCCGGATC-GATAGATTCTTCCG 285
|||| |||| ||||||||||||| | |||||||||||||||||| | ||||||||||||
Sbjct 188 TTCTACTAATACGCCATCTTCTAGCGCCGCCGCCGCTGCCGGATCTG-TAGATTCTTCCG 246
Query 286 CCGCCCGGAGAAATTCCAAGAGACCCAAGTATTCGAAATTTACTCAGCAGGAGCTTCCTG 345
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
Sbjct 247 CCGCCCGGAGAAATTCCAAGCGACCCAAGTATTCGAAATTTACACAGCAGGAGCTTCCAG 306
Query 346 CTTGCAAACCAATTCTTACGCCTGGTTGGGTGATTTCAACGTTTTTGATCATTAGTGTTA 405
||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 307 CTTGCAAGCCAATTCTTACGCCTGGTTGGGTGATTTCAACATTTTTGATCATCAGTGTTA 366
Query 406 TCTTCATTCCCCTTGGTGTTATTTCTCTCTTTGCTTCTCAGGATGTTGTTGAGATCGTTG 465
||||||||||||| || |||||||| || |||||||||||||||||||||||||||||||
Sbjct 367 TCTTCATTCCCCTCGGAGTTATTTCACTTTTTGCTTCTCAGGATGTTGTTGAGATCGTTG 426
Query 466 ATCGGTATGATAGTGCATGCATACCTCTATCTGAT-AGGGCTAACAAGGTTGCATACATT 524
||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||
Sbjct 427 ATCGGTATGATAGTGCATGCATACCTCTAACTGATCA-GGCTAACAAGGTTGCATACATT 485
Query 525 CAAGGAACTGGAAATAAATCTTGTACCCGGACGCTAATTGTGCCTAAGCGTATGAAGCAG 584
|||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 486 CAAGGAGCTGGAAATAAATCTTGTACCCGGACGCTGATAGTGCCTAAGCGTATGAAGCAG 545
Query 585 CCTATCTACGTATATTACCAGCTTGAGAACTTCTACCAGAATCACCGCAGGTATGTGAAA 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 CCTATCTACGTATATTACCAGCTTGAGAACTTCTACCAGAATCACCGCAGGTATGTGAAA 605
Query 645 AGCCGAAGTGATTCGCAATTGAGAAGTGTGAAAGATGAGAATCAAATAGACGCATGCAAG 704
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 606 AGCCGAAGTGATTCACAATTGAGAAGTTTGAAAGATGAGAATCAAATAGACGCATGCAAG 665
Query 705 CCTGAGGATGATTTTGGTGGGCAGCCAATTGTGCCATGTGGTCTAATTGCTTGGAGTCTC 764
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 666 CCTGAGGATGATGTTGGTGGGCTGCCAATTGTGCCATGTGGTCTAATTGCTTGGAGTCTC 725
Query 765 TTTAATGACACATACGTTCTATCAAGAAATAACCAGGGTTTAACGGTAAACAAGAAAGGA 824
|||||||||||||||| ||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 726 TTTAATGACACATACGCTCTATCAAGAAATAACCAGCGTTTAGCGGTAAACAAAAAAGGA 785
Query 825 ATTGCATGGAAGAGCGACAAGGAACACAAGTTTGGGAAAAATGTGTTTCCCAAGAACTTT 884
|| ||||||||||| |||| |||||||||||||||||||| |||||||| |||||||||
Sbjct 786 ATCGCATGGAAGAGTGACAGGGAACACAAGTTTGGGAAAAGGGTGTTTCCTAAGAACTTT 845
Query 885 CAGAAGGGCAATCTCACTGGTGGTGCCAGTCTAGATCCAAATAAACCATTGAGTGATCAA 944
|||||||||||||| | |||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 846 CAGAAGGGCAATCTGATTGGTGGTGCCGGTCTAGATCCAAATACACCATTGAGTGACCAA 905
Query 945 GAGGATCTGATCGTGTGGATGAGGACTGCTGCGTTGCCAACATTTAGAAAATTATACGGG 1004
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 906 GAGGATCTGATCGTGTGGATGAGGACTGCAGCGTTGCCAACATTTAGAAAATTATACGGG 965
Query 1005 AAGATAGAGAGTGACTTGGAGAAGGGTGAGAACATACAAGTGACTCTGCAGAACAACTAC 1064
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 966 AAGATAGAGAGTGACTTGGAGAAGGGTGATAACATACAAGTGACTCTGCAGAACAACTAC 1025
Query 1065 AACACATACAGTTTCAGTGGGAAGAAGAAGCTTGTTCTGTCAACAACAAGTTGGCTTGGT 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AACACATACAGTTTCAGTGGGAAGAAGAAGCTTGTTCTGTCAACAACAAGTTGGCTTGGT 1085
Query 1125 GGAAAGAACGACTTCCTCGGCATTGCTTACCTCACCGTTGGGGGAATCTGTTTCGTCTTG 1184
||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 1086 GGAAAGAACGACTTCCTTGGCATTGCTTACCTCACTGTTGGGGGAATCTGTTTCTTCTTG 1145
Query 1185 GCACTTGCATTTACCGTCATGTATCTTGTGAAACCCAGGCGACTCGGTGATCCTACCTAC 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GCACTTGCATTTACCGTCATGTATCTTGTGAAACCCAGGCGACTCGGTGATCCTACCTAC 1205
Query 1245 TTGTCGTGGAACAGAATTCCTGGAGGTCGTTAAACAGATGACTGCATCATCTGCGTATAT 1304
||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| |||
Sbjct 1206 TTGTCGTGGAACAGAATTCCTGGAGGTCGGTAAACAAATGACTGCATTATCTGCGTGTAT 1265
Query 1305 AAATCTACTTATCTCT-GGTTGTAATTTGATCCAAAATTGAAAGTGATGATCtttttttt 1363
||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 1266 AAATCTACTTATC-CTTGGTTGTAATTTGATCCAAAACTGAAAGTGATGAT-TTTTTTTT 1323
Query 1364 -tttAATATAGATGTGAAATGTATGTATGATGTTACAGTTGGAATATGCTCATTACATAG 1422
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1324 CTTTAATATAGATGTGAAATGTATGTATGATGTTACAGTTGGAAGATGCTCATTACATAG 1383
Query 1423 AATGATTGAT-G-CTTCCTATCATGCTCATTACCTTTTCTCTTTTTCTCCC-AAAAAGCA 1479
||||||| || | ||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 1384 AATGATT-ATTGGCTTCCTATCATGCTCTTTACCTTTTCTCTTTTTCTCCGGAAAAAGCA 1442
Query 1480 GTCCCTCGA 1488
|||||||||
Sbjct 1443 GTCCCTCGA 1451
> Ahg924165 jgi|Araly1|924165|scaffold_105446.1
Length=1092
Score = 1033 bits (559), Expect = 0.0
Identities = 898/1060 (85%), Gaps = 30/1060 (3%)
Strand=Plus/Plus
Query 233 TTCTAACACGCCATCTTCTAGCGCCGCCGCTGCCGGATCGATAGATTCTTCCGCCGCCCG 292
||| || ||| | || || ||||| | || ||||||||| |||||||||||||||| |
Sbjct 28 TTCCAATACGGCGTCGTCCAGCGCGGGGGCAGCCGGATCGGGAGATTCTTCCGCCGCCAG 87
Query 293 G-AGAAATTCCAAGAGACCCAAGTATTCGAAATTTACTCAGCAGGAGCTTCCTGCTTGCA 351
| || ||||| ||| |||||||||||||||| || || |||||||||||||| |||||||
Sbjct 88 GAAG-AATTCGAAGCGACCCAAGTATTCGAAGTTCACACAGCAGGAGCTTCCAGCTTGCA 146
Query 352 AACCAATTCTTACGCCTGGTTGGGTGATTTCAACGTTTTTGATCA-TTAGTGTTATCTTC 410
| |||||||| || ||||||||||| ||||| || |||||||| | | |||||||||||
Sbjct 147 AGCCAATTCTCACCCCTGGTTGGGTCATTTCGACATTTTTGAT-AGTCAGTGTTATCTTT 205
Query 411 ATTCCCCTTGGTGTTATTTCTCTCTTT-GCTTCTCAGGATGTTGTTGAGATCGTTGATCG 469
||||||||||| ||||| ||||| ||| ||||| ||||||||||| ||||||||||| ||
Sbjct 206 ATTCCCCTTGGAGTTATCTCTCT-TTTCGCTTCCCAGGATGTTGTGGAGATCGTTGACCG 264
Query 470 GTATGATAGTGCATGCATACCTCTATCTGATAGGGCTAACAAGGTTGCATACATTCAAGG 529
|||||||| || |||||| || | ||| |||| |||||||| ||||||| ||||||||
Sbjct 265 GTATGATACTGAATGCATTCCGGAACCTGCTAGGACTAACAAGATTGCATATATTCAAGG 324
Query 530 A-ACTGGAAATAAA-TCTTGTACCC-GGACGC-TAATTGTGCCTAAGCGTATGAAGCAGC 585
| | |||| ||||| | |||||||| ||| | ||| ||| | ||||||||||| ||||
Sbjct 325 AGA-TGGAGATAAAGT-TTGTACCCGGGA-TCTTAA-AGTGACAAAGCGTATGAAACAGC 380
Query 586 CTATCTACGTATATTACCAGCTTGAGAACTTCTACCAGAATCACCGCAGGTATGTGAAAA 645
|| |||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 381 CTGTCTATGTTTATTACCAGCTTGAGAACTTCTACCAGAATCACCGAAGGTATGTAAAAA 440
Query 646 GCCGAAGTGATTCGCAATTGAGAAGTGTGAAAGATGAGAATCAAAT-AGACGCATGCAAG 704
||||||||||||| || ||||||||| ||| | ||||||||||| || ||||||||||
Sbjct 441 GCCGAAGTGATTCACAGTTGAGAAGTCCAAAATACGAGAATCAAATAAG-CGCATGCAAG 499
Query 705 CCTGAGGATGATTTTGGTGGGCAGCCAATTGTGCCATGTGGTCTAATTGCTTGGAGTCTC 764
|||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 500 CCTGAGGATGATGTTGGTGGGCAGCCGATTGTGCCGTGTGGTCTAATTGCTTGGAGTCTC 559
Query 765 TTTAATGACACATACGTTCT-ATCAAGAAATAACC-AGGGTTTAACGGTAAACAAGAAAG 822
|||||||||||||||| || ||||||||| || | | | | | |||||||| ||||
Sbjct 560 TTTAATGACACATACGC-CTTATCAAGAAACAATGTAAGCCT-AGCTGTAAACAAAAAAG 617
Query 823 GAATTGCATGGAAGAGCGACAAGGAACACAAGTTTGGGAAAAATGTGTTTCCCAAGAACT 882
| |||||||||||||| ||||||||||||||||||||||| || || || |||||||| |
Sbjct 618 GCATTGCATGGAAGAGTGACAAGGAACACAAGTTTGGGAACAAGGTCTTCCCCAAGAATT 677
Query 883 TTCAGAAGGGCAATCTCACTGGTGGTGCCAGTCTAGATCCAAATAA-ACCA-TTGAGTGA 940
|||| ||||| ||| |||| |||||||| | | |||||||||| || ||| || |||||
Sbjct 678 TTCAAAAGGGGAATATCACAGGTGGTGCTACTTTAGATCCAAA-AATACCGCTT-AGTGA 735
Query 941 TCAAGAGGATCTGATCGTGTGGATGAGGACTGCTGCGTTGCCAACATTTAGAAAA-TTAT 999
||||| ||||| |||||||||||||| || || || |||||||||||||||||| || |
Sbjct 736 ACAAGAAGATCTCATCGTGTGGATGAGAACCGCAGCATTGCCAACATTTAGAAAACTT-T 794
Query 1000 ACGGGAAGATAGAGAGTGACTTGGAGAAGGGTGAGAACATACAAGTGACTCTGCAGAACA 1059
|||| ||||||||| |||| | |||| |||||| | |||||| || || ||| ||||||
Sbjct 795 ACGGAAAGATAGAGTCTGACCTCGAGATGGGTGACACCATACACGTTACGCTGAAGAACA 854
Query 1060 ACTACAACACATACAGTTTCAGTGGGAAGAAGAAGCTTGTTCTGTCAACAACAAGTTGGC 1119
|||||||||| |||||||||| ||||||||||||||||||| ||||||| || |||||||
Sbjct 855 ACTACAACACTTACAGTTTCAATGGGAAGAAGAAGCTTGTTTTGTCAACCACTAGTTGGC 914
Query 1120 TTGGTGGAAAGAACGACTTCCTCGGCATTGCTTACCTCACCGTTGG-GGGAATCTGTTTC 1178
| ||||| ||||| || |||||||||||||||||||| || ||||| |||| ||||||||
Sbjct 915 TGGGTGGGAAGAATGATTTCCTCGGCATTGCTTACCTGACAGTTGGCGGGA-TCTGTTTC 973
Query 1179 GTCTTGGCACTTGCATTTACCGTCATGTATCTTGTGAAACCCAGGCGACTCGGTGATCC- 1237
| ||||| || ||||||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 974 TTTTTGGCCCTCGCATTTACCATCATGTACCTTGTGAAACCCAGGCGACTTGGAGATCCA 1033
Query 1238 TACCTACTTGTCGTGGAACAGAATTCCTGGAGGTCGTTAA 1277
| |||||||||| ||||| |||| ||| |||||||| |||
Sbjct 1034 T-CCTACTTGTCATGGAATAGAAATCCCGGAGGTCGGTAA 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5