BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12750.1
Length=1412
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928998 jgi|Araly1|928998|scaffold_301455.1 1736 0.0
Ahg478636 jgi|Araly1|478636|fgenesh2_kg.3__1337__AT3G12740.1 189 5e-47
> Ahg928998 jgi|Araly1|928998|scaffold_301455.1
Length=1108
Score = 1736 bits (940), Expect = 0.0
Identities = 1053/1109 (95%), Gaps = 2/1109 (0%)
Strand=Plus/Plus
Query 26 AACATAAATATCTTAAACTCATGTCTGAATGTGGATGTTTTTCGGCAACAACTATGTTGA 85
|||| ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 1 AACACAAATATCTTAAACTCATGTCTGAATGTGGCTACTTTTCAGCAACAACTATGTTGA 60
Query 86 GAATTTGTGTAGTATTGATAATATGTTTGCATATGTGTTGTGCCTCGAGTGATTGTACAA 145
||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 GAATTTGTGTAGTCTTAATAATATGTTTACATATGTGTTGTGCCTCGAGTGATTGTACAA 120
Query 146 GTCACGATGATCCTGTGTCTCAAGACGAAGCAGAGAAAGCGACGAAGCTAAAGCTTGGTT 205
| ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 121 GCCACGATGATCCTGTGTCTCAAGAGGAAGCAGAGAAAGCGACAAAGCTGAAGCTTGGTT 180
Query 206 CGATAGCTTTACTTCTTGTAGCCGGAGGAGTCGGCGTGAGTCTACCGTTGATCGGGAAAA 265
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 181 CGATCGCTTTACTTCTTGTGGCCGGAGGTGTCGGCGTGAGTCTACCGTTGATCGGGAAAA 240
Query 266 GGATTCCGGCGTTACAACCGGAAAATGATATCTTCTTCATGGTGAAAGCTTTTGCTGCAG 325
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GGATTCCGGCGTTACAACCGGAAAACAATATCTTCTTCATGGTGAAAGCTTTTGCTGCAG 300
Query 326 GAGTGATCCTCTGCACAGGTTTCGTTCATATCTTACCAGACGCGTTCGAGAGATTGAGCT 385
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 GAGTGATCCTCTGCACAGGTTTCGTTCATATCTTACCAGACGCGTTCCAGAGATTGAGCT 360
Query 386 CTCCATGTCTTGAGGACACTACAGCTGGGAAGTTCCCGTTTGCTGGTTTTGTAGCGATGC 445
|||||||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||
Sbjct 361 CTCCATGTCTCCAGGACACTACAGCTGGAAAGTTCCCGTTTGCGGGTTTCGTAGCGATGC 420
Query 446 TGTCGGCGATGGGGACTCTTATGATCGACACATTCGCGACAGGGTATTACAAGAGGCAAC 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGTCGGCGATGGGGACTCTTATGATCGACACATTCGCGACAGGGTATTACAAGAGGCAAC 480
Query 506 ATTTTAGCAATAACCA-TGGGAGCAAGCAAGTGAACGTAGTAGTAGATGAAGAAGAGCAT 564
|||||| || |||| | |||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 481 ATTTTAACAGTAAC-AGTGGGAGCAAGCAAGTGAACGTAGTCGTAGACGAAGAAGAGCAT 539
Query 565 GCGGGTCATGTTCACATTCACACGCACGCTAGTCACGGACACACACATGGTTCGACCGAG 624
||||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 540 GCGGGCCATGTTCACGTTCACACGCACGCGAGTCACGGACACACACATGGCTCGACCGAG 599
Query 625 TTGATCAGAAGACGTATAGTGTCGCAGGTGCTTGAGATTGGGATAGTTGTGCATTCGGTT 684
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TTGATCAGAAGACGCATAGTGTCGCAGGTGCTTGAGATTGGGATAGTTGTGCATTCGGTT 659
Query 685 ATTATAGGGATATCACTTGGAGCTTCACAGAGCATAGACACCATAAAGCCACTCATGGCT 744
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ATAATAGGGATATCACTTGGAGCTTCACAGAGCATAGACACCATAAAGCCACTCATGGCT 719
Query 745 GCACTATCTTTCCATCAGTTCTTTGAAGGTCTTGGCCTCGGTGGATGCATCTCCCTGGCG 804
|| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 720 GCTCTCTCTTTCCATCAGTTCTTTGAAGGTCTTGGCCTCGGTGGATGCATCTCCATGGCG 779
Query 805 GATATGAAGTCGAAATCGACAGTGCTAATGGCGACATTTTTCTCGGTGACGGCGCCACTT 864
|| |||||||||||||| |||||| |||||||||||||||||||||| || |||||||||
Sbjct 780 GAGATGAAGTCGAAATCAACAGTGATAATGGCGACATTTTTCTCGGTAACAGCGCCACTT 839
Query 865 GGGATAGGAATAGGGTTGGGGATGTCAAGTGGTTTAGGCTACAGGAAAGAGAGCAAAGAG 924
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 840 GGGATAGGAATAGGGTTGGGGATGTCGAGTGGTTTAGGGTACAGGAAAGAGAGCAAAGAG 899
Query 925 GCAATAATGGTGGAAGGAATGTTGAATGCTGCATCTGCTGGGATACTCATATACATGTCA 984
||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 900 GCAATTATGGTGGAAGGAATGCTGAATGCTGCATCTGCTGGGATACTCATTTACATGTCA 959
Query 985 CTTGTTGATCTTCTTGCTACTGATTTTATGAATCCAAGATTGCAATCCAATCTCTGGCTT 1044
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTTGTTGATCTTCTTGCTCCTGATTTTATGAATCCAAGATTGCAATCCAATCTCTGGCTT 1019
Query 1045 CACTTGGCTGCTTATCTCTCTCTCGTCCTAGGCGCAGGTTCCATGTCTCTCCTCGCCATC 1104
|||||||| |||||||||||||||||||||||| | | ||||||||||||||| ||||||
Sbjct 1020 CACTTGGCCGCTTATCTCTCTCTCGTCCTAGGCTCTGCTTCCATGTCTCTCCTTGCCATC 1079
Query 1105 TGGGCCTGATTCTTGATCTGAAACTAACA 1133
|||||||||||||||| ||| ||||||||
Sbjct 1080 TGGGCCTGATTCTTGAGCTGCAACTAACA 1108
> Ahg478636 jgi|Araly1|478636|fgenesh2_kg.3__1337__AT3G12740.1
Length=1451
Score = 189 bits (102), Expect = 5e-47
Identities = 118/125 (94%), Gaps = 4/125 (3%)
Strand=Plus/Minus
Query 1291 TCGAGGGACTGCTTTTT-GGGAGAAAAAGAGAAAAGGTAATGAGCATGATAGGAAG-C-A 1347
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1451 TCGAGGGACTGCTTTTTCCGGAGAAAAAGAGAAAAGGTAAAGAGCATGATAGGAAGCCAA 1392
Query 1348 TCAATCATTCTATGTAATGAGCATATTCCAACTGTAACATCATACATACATTTCACATCT 1407
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1391 T-AATCATTCTATGTAATGAGCATCTTCCAACTGTAACATCATACATACATTTCACATCT 1333
Query 1408 ATATT 1412
|||||
Sbjct 1332 ATATT 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52793079570
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5