BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12760.1
Length=1131
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341389 jgi|Araly1|341389|fgenesh1_pg.C_scaffold_3001152 828 0.0
> Ahg341389 jgi|Araly1|341389|fgenesh1_pg.C_scaffold_3001152
Length=657
Score = 828 bits (448), Expect = 0.0
Identities = 478/493 (97%), Gaps = 0/493 (0%)
Strand=Plus/Plus
Query 485 TGAGGTGGAACCGCAAGACATAGTCACGTTGGTTCTTTCGTGGCATATGAATGCTGCAAC 544
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 165 TGAGGTGGAACCCCAAGACATAGTCACGTTGGTTCTTTCGTGGCATATGAATGCTGCCAC 224
Query 545 AGCGTGTGAGTTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGGTGTAGATTC 604
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 225 AGCTTGTGAATTTTCCAGGCAAGAATTTATCAGTGGATTACAGGCATTAGGTGTAGATTC 284
Query 605 AATCGGGAAGTTGCAGGAAAAGCTGCCATTTATGCGTTCTGAGCTTAAAGATGAACAAAA 664
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 AATCGGGAAGTTGCACGAAAAGCTGCCATTTATGCGTTCTGAGCTTAAAGATGAACAAAA 344
Query 665 GTTCCATGAGATATACAACTTTGCTTTTGGGTGGGCGAAAGAGAAGGGGCAGAAATCTCT 724
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 345 GTTCCATGATATATACAACTTTGCTTTTGGGTGGGCGAAAGAGAAGGGGCAGAAATCTCT 404
Query 725 TGCCTTAGACACAGCGATTGGGATGTGGCAGTTGCTCTTTGCAGAAAGAGAGTGGCCTTT 784
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 405 TGCTTTAGACACAGCGATTGGGATGTGGCAGTTGCTCTTTGCAGAAAGAGAGTGGCCATT 464
Query 785 GGTAACTCACTGGTGTGATTTCTTGCAGGATCGTCATAACAAGGCCATATCTAAGGACAC 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 GGTAACTCACTGGTGTGATTTCTTGCAGGATCGTCATAACAAGGCCATATCTAAGGACAC 524
Query 845 ATGGGCACAGCTACTGGAATTTTCAAGGATGGTCGACCCAGTGCTGTCGAATTACGATGC 904
|||||||||||| ||||||||| |||||| ||||||||| ||||||||||||||||||||
Sbjct 525 ATGGGCACAGCTCCTGGAATTTGCAAGGACGGTCGACCCGGTGCTGTCGAATTACGATGC 584
Query 905 AGAAGGAGCATGGCCTTACCTGATTGATGAATTCGTTGAGTATTTGTATGACAAAAATGT 964
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 585 TGAAGGAGCATGGCCTTACCTCATTGATGAATTCGTTGAGTATTTGTATGACAAGAATGT 644
Query 965 CGTTGAGAAGTGA 977
|||||||||||||
Sbjct 645 CGTTGAGAAGTGA 657
Score = 287 bits (155), Expect = 1e-76
Identities = 163/167 (98%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 225 ATGCATAAGTTGAGCAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATCACAGGA 284
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGCATAAGTTGAGTAGAAGCAACCGTGACAAACTTCAGCAGTTCGTGGCTATAACAGGA 60
Query 285 GCTAGTGAGAAGAATGCTCTTCAGGCTCTCAAAGCCAGTGATTGGCACCTTGAAGCAGCG 344
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 61 GCTAGCGAGAAGAATGCTCTTCAGGCTCTCAAAGCTAGTGATTGGCACCTTGAAGCAGCG 120
Query 345 TTTGATGTGTTTTACAGCCAGCCTCAACCAAGAAGCAATGCTGCTGA 391
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTGATGTGTTTTACAGCCAGCCTCAACCAAGAAGCAATGCTGCTGA 167
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42163946202
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5