BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12775.1
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478640 jgi|Araly1|478640|fgenesh2_kg.3__1341__AT3G12775.1 1493 0.0
> Ahg478640 jgi|Araly1|478640|fgenesh2_kg.3__1341__AT3G12775.1
Length=1093
Score = 1493 bits (808), Expect = 0.0
Identities = 1005/1099 (91%), Gaps = 18/1099 (2%)
Strand=Plus/Plus
Query 1 ATGAGTAATGATAGTTCTAAT-ATTACTAATCTCTTCGAAGGTAGGGATAAAGGTATTGG 59
||||||||| ||| |||| | |||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGAGTAATAATAATTCT-TTGATTACTAATCTCTTCGAAGGTAGGAATAAAGGTATTGA 59
Query 60 TGCAAGCAGCAGCGACTCTGATGATGATCGAGCAGGTTCTTCTACTGAGCAGGAAGAAGA 119
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 60 TGCAAGCAGCAGCGACTCTGATGATGATCGAGCAGTTTCTACTACTGAGCAGGAAGAAGA 119
Query 120 TGAAT-CCCAAAACCTTGTACCGGAGTCTAAACCGGGATCGGAAGGTGAAAAAGTGGGTG 178
||||| ||||||| ||| ||||||||||||||||| |||||||||||| |||||||| |
Sbjct 120 TGAATCCCCAAAA-CTTATACCGGAGTCTAAACCGCAATCGGAAGGTGATAAAGTGGGCG 178
Query 179 ACATCGTTCGTTTTGGTAAAGACAGTTACTTCGTTATTGATATCTTCGAGAAAGAGATCA 238
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 179 ACATCGTTCGTTTTGGAAAAGACAGTTACTTCGTTATTGATATTTTCGAGAAAGAGATCA 238
Query 239 TGGAGTTAGGAGACAAAGTGGATTTAAACTACAAGAGATTCAAAAAGTTCGAAGCTGTTG 298
||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||
Sbjct 239 TGGAGTTAGGAGACAAAGTTGATTTAAACTTCAAGAGATTCAAAAGGTTCGAAGCTGTTT 298
Query 299 ATGGAGGCGCTCCGCGAGATCATCACTTCTACAACTACCGTTGCTGTTACTCCTCTTATT 358
|||||| |||||||||||| ||||||||||||||||||| |||||||||||| | | |
Sbjct 299 ATGGAGACGCTCCGCGAGACCATCACTTCTACAACTACCATTGCTGTTACTC-T-TGCTG 356
Query 359 TATGCGTCTGCGCGAGTAGTACTGTGGATAGATTGTGGGGGATTCTAGAGAGGGGTCTAG 418
||||||||| |||||||||| |||| ||||||||||||||||||||||| || ||||
Sbjct 357 C-TGCGTCTGCTCGAGTAGTACCGTGGGTAGATTGTGGGGGATTCTAGAGACAGGACTAG 415
Query 419 CCTCCAGAGAGAAGGAAGGCGTCAGCTTCTTCGTGAGAACTTACAAAGAGAGAAAAGAGC 478
|||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 416 CCTCGAGGGAGAAGGAAGGAGTCAGCTTCTTCGTGAGAACTTATAAAGAGAGAAAAGAGC 475
Query 479 TGATGAGAGTTGCTGTCACTGTAACAGATTGTTATCAGAATCATAATTTGTACTTCTTCG 538
|||||||||||| ||| ||||| ||||||||| ||||||||||||| |||||||||||||
Sbjct 476 TGATGAGAGTTGTTGTAACTGTCACAGATTGTCATCAGAATCATAACTTGTACTTCTTCG 535
Query 539 ACCTCAAGTTCCCCAAGGAGTATCCATATCAAGCACCGAGTTTCTATTACCATCCGTATG 598
||||||||||||| | |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 536 ACCTCAAGTTCCCTAGGGAGTATCCATATCGAGCACCGAGTTTCTATTACCATCCCTATG 595
Query 599 ACCTTCGTTTGAGTACTCCTGAAGACCAAAAGTCACTGAGAGATAAG-CACTGCTACAAC 657
||||| ||||||||||||||||| |||||||||| ||| ||| ||| | ||||||||||
Sbjct 596 GCCTTCATTTGAGTACTCCTGAAGCCCAAAAGTCATTGAAAGAAAAGTC-CTGCTACAAC 654
Query 658 ATCGTAGATGTGTTTCTCCACATTCAAGAGATTGTGTTGATGAACACTAACAAGTCATGT 717
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 655 ATCTTAGATGTGTTTCTCCACATTCAAGAGATTGTGTTGATGAACACCAACAAGTCATGT 714
Query 718 AACCAGATGCTAGATATCCTGGAACGGCCACTCGCGGGGTTTCAAGATTTCGTAATAGGG 777
|||||||||||||||| || |||| ||| ||||||||||||||||||||||||| ||||
Sbjct 715 CACCAGATGCTAGATATTCTTGAACAGCCGCTCGCGGGGTTTCAAGATTTCGTAAAAGGG 774
Query 778 TATTTTAGGAAGAAGGGGCCTTTGATTCTGCGGAACATGCTGCAAGAGTTTGATATGGAG 837
|||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 775 TATTTTAGGAGGAAGGGGCCTTTGATTCTGCGGAACTTGCTGCAAGAGTTGGATATGGAG 834
Query 838 GAAGAGAGGGACAAGAAAATGTTCTGGAAGATGTACTTTGCGTTTGAAGGCAATAAAGTT 897
|| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 835 GAGGAGAGGGACAAGAAAATGTTCTGGAAGTTGTACTTTGCCTTTGAAGGCAATAAAGTT 894
Query 898 TATTGTGAGCAGATTCTCAACAGTGATCTGAAAGCAGAGCTGGAGAAATTGAAGGAGAAA 957
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 895 TATTGTGAGCAGATTCTGAACAGTGACCTGAAAGCAGAGCTGGAGAAATTGAAGGAGAAA 954
Query 958 GAGTATACATTAAGCGATTACTACTATGG--CT-CATCATCTTCCAACTACCCAACCTAC 1014
|| ||||||||||||||||||||||||| || | |||||| |||||||||||||||||
Sbjct 955 GAACATACATTAAGCGATTACTACTATGGTTCTTCTTCATCTCCCAACTACCCAACCTAC 1014
Query 1015 ACTCAAAGGGATGATGGTATCAAGAAGACTTCCAAAA------GCTTTTGGAACAAGTAC 1068
|||||| ||||||||||||| |||||||| ||||||| ||||||||| |||||||
Sbjct 1015 ACTCAACGGGATGATGGTATTAAGAAGACATCCAAAATCCAAAGCTTTTGGAGCAAGTAC 1074
Query 1069 TTGTCTGTGTCTTTTGATT 1087
|||||| ||||||| ||||
Sbjct 1075 TTGTCTTTGTCTTTCGATT 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40562783688
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5