BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12775.1 Length=1089 Score E Sequences producing significant alignments: (Bits) Value Ahg478640 jgi|Araly1|478640|fgenesh2_kg.3__1341__AT3G12775.1 1493 0.0 > Ahg478640 jgi|Araly1|478640|fgenesh2_kg.3__1341__AT3G12775.1 Length=1093 Score = 1493 bits (808), Expect = 0.0 Identities = 1005/1099 (91%), Gaps = 18/1099 (2%) Strand=Plus/Plus Query 1 ATGAGTAATGATAGTTCTAAT-ATTACTAATCTCTTCGAAGGTAGGGATAAAGGTATTGG 59 ||||||||| ||| |||| | |||||||||||||||||||||||| |||||||||||| Sbjct 1 ATGAGTAATAATAATTCT-TTGATTACTAATCTCTTCGAAGGTAGGAATAAAGGTATTGA 59 Query 60 TGCAAGCAGCAGCGACTCTGATGATGATCGAGCAGGTTCTTCTACTGAGCAGGAAGAAGA 119 ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 60 TGCAAGCAGCAGCGACTCTGATGATGATCGAGCAGTTTCTACTACTGAGCAGGAAGAAGA 119 Query 120 TGAAT-CCCAAAACCTTGTACCGGAGTCTAAACCGGGATCGGAAGGTGAAAAAGTGGGTG 178 ||||| ||||||| ||| ||||||||||||||||| |||||||||||| |||||||| | Sbjct 120 TGAATCCCCAAAA-CTTATACCGGAGTCTAAACCGCAATCGGAAGGTGATAAAGTGGGCG 178 Query 179 ACATCGTTCGTTTTGGTAAAGACAGTTACTTCGTTATTGATATCTTCGAGAAAGAGATCA 238 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 179 ACATCGTTCGTTTTGGAAAAGACAGTTACTTCGTTATTGATATTTTCGAGAAAGAGATCA 238 Query 239 TGGAGTTAGGAGACAAAGTGGATTTAAACTACAAGAGATTCAAAAAGTTCGAAGCTGTTG 298 ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||| Sbjct 239 TGGAGTTAGGAGACAAAGTTGATTTAAACTTCAAGAGATTCAAAAGGTTCGAAGCTGTTT 298 Query 299 ATGGAGGCGCTCCGCGAGATCATCACTTCTACAACTACCGTTGCTGTTACTCCTCTTATT 358 |||||| |||||||||||| ||||||||||||||||||| |||||||||||| | | | Sbjct 299 ATGGAGACGCTCCGCGAGACCATCACTTCTACAACTACCATTGCTGTTACTC-T-TGCTG 356 Query 359 TATGCGTCTGCGCGAGTAGTACTGTGGATAGATTGTGGGGGATTCTAGAGAGGGGTCTAG 418 ||||||||| |||||||||| |||| ||||||||||||||||||||||| || |||| Sbjct 357 C-TGCGTCTGCTCGAGTAGTACCGTGGGTAGATTGTGGGGGATTCTAGAGACAGGACTAG 415 Query 419 CCTCCAGAGAGAAGGAAGGCGTCAGCTTCTTCGTGAGAACTTACAAAGAGAGAAAAGAGC 478 |||| || ||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 416 CCTCGAGGGAGAAGGAAGGAGTCAGCTTCTTCGTGAGAACTTATAAAGAGAGAAAAGAGC 475 Query 479 TGATGAGAGTTGCTGTCACTGTAACAGATTGTTATCAGAATCATAATTTGTACTTCTTCG 538 |||||||||||| ||| ||||| ||||||||| ||||||||||||| ||||||||||||| Sbjct 476 TGATGAGAGTTGTTGTAACTGTCACAGATTGTCATCAGAATCATAACTTGTACTTCTTCG 535 Query 539 ACCTCAAGTTCCCCAAGGAGTATCCATATCAAGCACCGAGTTTCTATTACCATCCGTATG 598 ||||||||||||| | |||||||||||||| |||||||||||||||||||||||| |||| Sbjct 536 ACCTCAAGTTCCCTAGGGAGTATCCATATCGAGCACCGAGTTTCTATTACCATCCCTATG 595 Query 599 ACCTTCGTTTGAGTACTCCTGAAGACCAAAAGTCACTGAGAGATAAG-CACTGCTACAAC 657 ||||| ||||||||||||||||| |||||||||| ||| ||| ||| | |||||||||| Sbjct 596 GCCTTCATTTGAGTACTCCTGAAGCCCAAAAGTCATTGAAAGAAAAGTC-CTGCTACAAC 654 Query 658 ATCGTAGATGTGTTTCTCCACATTCAAGAGATTGTGTTGATGAACACTAACAAGTCATGT 717 ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 655 ATCTTAGATGTGTTTCTCCACATTCAAGAGATTGTGTTGATGAACACCAACAAGTCATGT 714 Query 718 AACCAGATGCTAGATATCCTGGAACGGCCACTCGCGGGGTTTCAAGATTTCGTAATAGGG 777 |||||||||||||||| || |||| ||| ||||||||||||||||||||||||| |||| Sbjct 715 CACCAGATGCTAGATATTCTTGAACAGCCGCTCGCGGGGTTTCAAGATTTCGTAAAAGGG 774 Query 778 TATTTTAGGAAGAAGGGGCCTTTGATTCTGCGGAACATGCTGCAAGAGTTTGATATGGAG 837 |||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 775 TATTTTAGGAGGAAGGGGCCTTTGATTCTGCGGAACTTGCTGCAAGAGTTGGATATGGAG 834 Query 838 GAAGAGAGGGACAAGAAAATGTTCTGGAAGATGTACTTTGCGTTTGAAGGCAATAAAGTT 897 || ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| Sbjct 835 GAGGAGAGGGACAAGAAAATGTTCTGGAAGTTGTACTTTGCCTTTGAAGGCAATAAAGTT 894 Query 898 TATTGTGAGCAGATTCTCAACAGTGATCTGAAAGCAGAGCTGGAGAAATTGAAGGAGAAA 957 ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 895 TATTGTGAGCAGATTCTGAACAGTGACCTGAAAGCAGAGCTGGAGAAATTGAAGGAGAAA 954 Query 958 GAGTATACATTAAGCGATTACTACTATGG--CT-CATCATCTTCCAACTACCCAACCTAC 1014 || ||||||||||||||||||||||||| || | |||||| ||||||||||||||||| Sbjct 955 GAACATACATTAAGCGATTACTACTATGGTTCTTCTTCATCTCCCAACTACCCAACCTAC 1014 Query 1015 ACTCAAAGGGATGATGGTATCAAGAAGACTTCCAAAA------GCTTTTGGAACAAGTAC 1068 |||||| ||||||||||||| |||||||| ||||||| ||||||||| ||||||| Sbjct 1015 ACTCAACGGGATGATGGTATTAAGAAGACATCCAAAATCCAAAGCTTTTGGAGCAAGTAC 1074 Query 1069 TTGTCTGTGTCTTTTGATT 1087 |||||| ||||||| |||| Sbjct 1075 TTGTCTTTGTCTTTCGATT 1093 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40562783688 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5