BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12780.1
Length=1768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478641 jgi|Araly1|478641|fgenesh2_kg.3__1342__AT3G12780.1 2647 0.0
Ahg474689 jgi|Araly1|474689|fgenesh2_kg.1__4643__AT1G56190.1 1602 0.0
Ahg477124 jgi|Araly1|477124|fgenesh2_kg.2__2254__AT1G79550.2 632 2e-180
> Ahg478641 jgi|Araly1|478641|fgenesh2_kg.3__1342__AT3G12780.1
Length=1644
Score = 2647 bits (1433), Expect = 0.0
Identities = 1580/1651 (96%), Gaps = 9/1651 (1%)
Strand=Plus/Plus
Query 98 TAAGAACATTGTGAGTCACTCTCTCTGTTTCTCATCTCCTCATC-TTTTTATCTTCTTTG 156
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1 TAACAACATTGTGAGTCACTCTCTCTGTTTCTCATCTCCTCATCTTTTTTATCTTC--T- 57
Query 157 ATTGATCCACATGGCTTCCGCTGCCGCAAGTTCCGCCTTTTCACTCCTTAAGTCCACCGG 216
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 58 -TTGATCCACATGGCTTCAGCTGCCGCAAGTCCCGCCTTTTCACTCCTTAAGTCCACCGG 116
Query 217 -CGCTGTTGCTTCCTCCGCCGGAACTCGCGCACGTGCCTCCCTTCTGCCAATTCCCTCTA 275
|| || |||||||||||||||||||||||||| ||||||||| | |||||||||||||
Sbjct 117 TGGC-GTCGCTTCCTCCGCCGGAACTCGCGCACGCGCCTCCCTTTTACCAATTCCCTCTA 175
Query 276 CCTCTGTTTCCGCGCGTCCTCTAGGCTTCTCCGCCACTCTAGATTCCCGTCGTTTCTCTC 335
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 176 CCTCTGTTTCCGCGCGTCCTCTTGGCTTCTCCGCCACTCTCGATTCCCGTCGTTTCTCTC 235
Query 336 TCCACGTTGCTTCCAAAGTTGAATCGGTGCGTGGGAAGGGAAGCAGAGGAGTGGTTTCTA 395
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 236 TCCACGTTGCTTCCAAAGTTGAATCGGTGTGCGGGAAGGGAAGCAGAGGAGTGGTTTCTA 295
Query 396 TGGCGAAGAAGAGCGTCGGAGATCTGACCTCAGCTGATTTGAAGGGGAAGAAGGTTTTCG 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TGGCGAAGAAGAGCGTCGGAGATCTGACCTCAGCTGATTTGAAGGGGAAGAAGGTTTTCG 355
Query 456 TGAGAGCTGATCTCAATGTACCTCTCGATGATAATCAGACTATCACTGACGATACCAGAA 515
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 356 TGAGAGCTGATCTCAATGTACCTCTCGATGATAACCAGACTATCACTGACGATACCAGAA 415
Query 516 TCCGTGCCGCCATTCCAACGATCAAGTATTTGATTGAAAATGGTGCTAAAGTTATCCTCT 575
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 416 TCCGTGCCGCTATTCCAACGATCAAGTATTTGATCGACAATGGTGCTAAAGTTATCCTCT 475
Query 576 CCACTCATCTGGGAAGGCCAAAGGGAGTCACCCCAAAGTTTAGTTTGGCTCCTCTTGTCC 635
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 476 CCACTCATCTGGGAAGGCCAAAGGGAGTCACACCAAAGTTTAGTTTGGCTCCTCTTGTCC 535
Query 636 CTAGGCTCTCCGAGCTTCTTGGTATTGAGGTCACGAAAGCTGATGATTGTATTGGCCCAG 695
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 536 CTAGGCTCTCCGAGCTTCTTGGTATTGAGGTCACGAAAGCTGATGATTGTATCGGTCCAG 595
Query 696 AAGTGGAAAGCTTGGTGGCTTCTCTACCTGAAGGTGGAGTTTTGCTTCTTGAGAACGTCA 755
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 596 AAGTAGAAAGCTTGGTGGCTTCTCTTCCTGAAGGTGGAGTTTTGCTTCTTGAGAATGTCA 655
Query 756 GGTTTTACAAGGAGGAAGAGAAGAACGATCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAG 815
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GGTTTTACAAGGAAGAAGAGAAGAACGATCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAG 715
Query 816 CTGACCTTTATGTCAATGATGCTTTCGGAACTGCTCACAGAGCTCATGCTTCTACCGAAG 875
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CTGACCTTTATGTCAATGATGCTTTCGGAACTGCTCACAGAGCTCATGCTTCTACCGAAG 775
Query 876 GAGTCACTAAGTTCTTGAAGCCTTCAGTTGCTGGTTTCCTTTTGCAAAAGGAACTGGACT 935
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 776 GAGTCACTAAGTTCTTGAAGCCTTCAGTTGCTGGTTTCCTTCTGCAAAAGGAGCTGGACT 835
Query 936 ACCTAGTTGGTGCTGTTTCAAACCCAAAGAGACCATTTGCAGCCATAGTGGGTGGTTCCA 995
| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATCTTGTTGGCGCTGTTTCAAACCCAAAGAGACCATTTGCAGCCATAGTGGGTGGTTCCA 895
Query 996 AAGTCTCATCCAAGATTGGAGTTATTGAATCGCTTCTGGAGAAGTGTGATATTCTTCTTC 1055
| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 896 AGGTCTCATCAAAGATTGGAGTTATTGAATCGCTTCTGGAGAAATGTGATATCCTTCTTC 955
Query 1056 TTGGTGGTGGAATGATCTTCACATTCTACAAGGCACAGGGTCTTTCAGTTGGTTCGTCCC 1115
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 956 TTGGTGGTGGAATGATCTTTACATTCTACAAGGCACAAGGTCTTTCAGTTGGTTCGTCCC 1015
Query 1116 TTGTTGAAGAAGACAAGCTTGAATTGGCTACAGAACTCCTTGCCAAAGCTAAGGCCAAAG 1175
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 TTGTTGAAGAAGACAAACTTGAATTGGCTACAGAACTCCTTGCCAAAGCTAAGGCCAAAG 1075
Query 1176 GAGTCTCTCTTTTGTTGCCAACAGATGTTGTAGTTGCTGACAAGTTTGCTCCTGATGCCA 1235
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1076 GAGTCTCTCTTTTGTTGCCAACAGATGTTGTGGTTGCTGACAAGTTTGCTCCTGATGCCA 1135
Query 1236 ACAGCAAGATTGTGCCTGCATCAGGCATTGAGGACGGATGGATGGGACTGGACATTGGTC 1295
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 1136 ACAGCAAGATTGTGCCTGCATCAGGCATTGAGGACGGATGGATGGGATTGGACATCGGTC 1195
Query 1296 CAGACTCTATCAAAACTTTCAACGAAGCTCTGGACACAACACAAACAGTCATTTGGAATG 1355
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1196 CAGACTCTATCAAAACTTTCAACGAAGCTCTGGACACAACACAAACAGTTATTTGGAATG 1255
Query 1356 GACCTATGGGAGTTTTCGAGATGGAAAAGTTTGCGGCTGGAACAGAGGCGATAGCGAATA 1415
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1256 GACCTATGGGAGTTTTCGAGATGGAAAAGTTTGCGGCAGGAACAGAGGCGGTAGCGAATA 1315
Query 1416 AACTAGCAGAGCTAAGTGAAAAAGGAGTGACAACGATAATAGGAGGAGGAGACTCAGTGG 1475
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1316 AACTAGCAGAGCTCAGTGGAAAAGGAGTGACAACGATAATAGGAGGAGGAGACTCGGTGG 1375
Query 1476 CTGCAGTGGAGAAAGTAGGAGTAGCAGGAGTCATGAGTCACATCTCCACTGGTGGTGGAG 1535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1376 CTGCAGTGGAGAAAGTAGGAGTAGCAGGAGTCATGAGTCACATCTCCACTGGTGGTGGAG 1435
Query 1536 CCAGCTTGGAGCTGTTGGAAGGAAAAGTACTTCCCGGTGTGATCGCCCTTGATGAAGCAA 1595
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1436 CCAGCTTGGAGCTGTTGGAAGGCAAAGTACTTCCCGGTGTGATCGCCCTTGATGAAGCGA 1495
Query 1596 TCCCAGTCACTGTTTAGAAACTCTTACCATCTATAAGGCAAACGCTGTATACTTAAAAGA 1655
|||||||||| |||||||||||||||||||| || || ||||| ||||||||||| | ||
Sbjct 1496 TCCCAGTCACCGTTTAGAAACTCTTACCATCGATGAGTCAAACTCTGTATACTTACA-GA 1554
Query 1656 GTTTCTTTCGCTTTAAATCTACCTATGCAAAACTTTACTATGTATCAGAGTCTCATTCCC 1715
|||||||||||| ||||||||||||| ||| |||| ||||| |||||||||||| ||| |
Sbjct 1555 GTTTCTTTCGCTGTAAATCTACCTATTCAACACTTGACTATTTATCAGAGTCTCGTTCTC 1614
Query 1716 CGGAAAAGAAAACTCACATATTAAAATTCTG 1746
||| | ||||| |||| ||||||||||||||
Sbjct 1615 CGGTATAGAAA-CTCATATATTAAAATTCTG 1644
> Ahg474689 jgi|Araly1|474689|fgenesh2_kg.1__4643__AT1G56190.1
Length=1760
Score = 1602 bits (867), Expect = 0.0
Identities = 1209/1373 (88%), Gaps = 27/1373 (2%)
Strand=Plus/Plus
Query 251 GCCTCCCTTC-TGCCAATTCCC-TCTACCTCTGTTTCCGCGCGTC-CTCTAGGCTTCTCC 307
|||| ||||| | || | |||| || ||| |||| ||||| |||| | || |||||||||
Sbjct 245 GCCT-CCTTCTTACCCA-TCCCATCCACCGCTGTCTCCGCACGTCGC-CTCGGCTTCTCC 301
Query 308 GCCACTC-TAGATTCCCGTCGTTTCTCTC-TCCACGTTGCTTCCAAAGTTGAATCGGTGC 365
||| || | || | || |||||||| | ||||||| |||||||| || | || ||||
Sbjct 302 GCC-GTCGTTGA--CTCG-CGTTTCTC-CGTCCACGTGGCTTCCAAGGTCCAGTCCGTGC 356
Query 366 GTGGGAAGGGAAGCAGAGGAGTGGTTTCTATGGCGAAGAAGAGCGTCGGAGATCTGACCT 425
| || ||||||| ||| |||||| || | |||||||||||||| || ||||||||||| |
Sbjct 357 GCGGAAAGGGAACCAGGGGAGTGATTACGATGGCGAAGAAGAGTGTTGGAGATCTGACTT 416
Query 426 CAGCTGATTTGAAGGGGAAGAAGGT-TTTCGTGAGAGCTGATCTCAATGTACCTCTCGAT 484
| || ||||||||||| |||||||| ||| || |||||||||||||||||||||||||||
Sbjct 417 CTGCGGATTTGAAGGGTAAGAAGGTGTTT-GTTAGAGCTGATCTCAATGTACCTCTCGAT 475
Query 485 GATAATCAGACTATCACTGACGATACCAGAATCCGTGCCGCCATTCCAACGATCAAGTAT 544
|| || |||| |||||||||||| || |||||| | || |||||||| || || |||| |
Sbjct 476 GACAACCAGAATATCACTGACGACACTAGAATCAGAGCTGCCATTCCCACCATTAAGTTT 535
Query 545 TTGATTGAAAATGGTGCTAAAGTTATCCTCTCCACTCATCTGGGAAGGCCAAAGGGAGTC 604
|||||||| ||||||||||| || ||||||||||||||| ||||||||||||| || |||
Sbjct 536 TTGATTGAGAATGGTGCTAAGGTCATCCTCTCCACTCATTTGGGAAGGCCAAAAGGTGTC 595
Query 605 ACCCCAAAGTTTAGTTTGGCTCCTCTTG-TCCCTAGGCTCTCCGAGCTTCTTGGTATTGA 663
|| |||||||| || ||||||||||||| |||| || | || ||||| |||||||||||
Sbjct 596 ACTCCAAAGTTCAGCTTGGCTCCTCTTGTTCCC-AGATTGTCAGAGCTCCTTGGTATTGA 654
Query 664 GGTCACGAAAGCTGATGATTGTATTGGCCCAGAAGTGGAAAGCTTGGTGGCTTCTCTACC 723
|||| ||||||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 655 GGTCGTGAAAGCTGATGATTGTATTGGTCCAGAAGTGGAAAGCTTGGTGGCTTCCCTTCC 714
Query 724 TGAAGGTGGAGTTTTGCTTCTTGAGAACGTCAGGTTTTACAAGGAGGAAGAGAAGAACGA 783
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 715 TGAAGGTGGAGTTTTGCTTCTTGAGAACGTGAGGTTTTACAAGGAAGAAGAGAAGAACGA 774
Query 784 TCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAATGATGCTTTCGG 843
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 775 ACCTGAGTTTGCAAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAACGATGCTTTCGG 834
Query 844 AACTGCTCACAGAGCTCATGCTTCTACCGAAGGAGTCACTAAGTTCTTGAAGCCTTCAGT 903
|||||||| ||||| |||||||| || || ||||||||||||||||||||||| |||||
Sbjct 835 GACTGCTCATAGAGCCCATGCTTCAACAGAGGGAGTCACTAAGTTCTTGAAGCCATCAGT 894
Query 904 TGCTGGTTTCCTTTTGCAAAAGGAACTGGACTACCTAGTTGGTGCTGTTTCAAACCCAAA 963
|||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||||
Sbjct 895 TGCTGGTTTCCTTTTGCAAAAGGAGTTGGACTACCTTGTGGGTGCGGTTTCAAACCCAAA 954
Query 964 GAGACCATTTGCAGCCATAGTGGGTGGTTCCAAA-GTCTCATCCAAGATTGGAGTTATTG 1022
|||||||||||| ||||| ||||| |||| |||| |||||||| |||||||||||||| |
Sbjct 955 GAGACCATTTGCTGCCATTGTGGGAGGTT-CAAAGGTCTCATCTAAGATTGGAGTTATCG 1013
Query 1023 AATCGCTTCTGGAGAAGTGTGATATTCTTCTTCTTGGTGGTGGAATGATCTTCACATTCT 1082
|||| ||||| ||||| ||||| |||||||| |||||||||||||||||||| |||||||
Sbjct 1014 AATCTCTTCTTGAGAAATGTGACATTCTTCTGCTTGGTGGTGGAATGATCTTTACATTCT 1073
Query 1083 ACAAGGCACAGGGTCTTTCAGTTGGTTCGTCCCTTGTTGAAGAAGACAAGCTTGAATTGG 1142
||||||| || |||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 1074 ACAAGGCGCAAGGTCTTTCTGTTGGCTCTTCCCTTGTTGAAGAAGACAAGCTTGAATTGG 1133
Query 1143 CTACAGAACTCCTTGCCAAAGCTAAGGCCAAAGGAGTCTCTCTTTTGTTGCCAACAGATG 1202
||||| ||||||||| || |||||||||| |||||||||||| ||||| ||||||||||
Sbjct 1134 CTACATCACTCCTTGCTAAGGCTAAGGCCAGAGGAGTCTCTCTGTTGTTACCAACAGATG 1193
Query 1203 TTGTAG-TTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCTGCATCAGGC 1261
|||| | ||||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1194 TTGT-GATTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTGCCAGCTTCAGCC 1252
Query 1262 ATTGAGGACGGATGGATGGGACTGGACATTGGTCCAGACTCTATCAAAACTTTCAACGAA 1321
||| || || ||||||||| ||||||| ||||||||||| | |||||||||||||||
Sbjct 1253 ATTCCTGATGGGTGGATGGGATTGGACATCGGTCCAGACTCGGTGAAAACTTTCAACGAA 1312
Query 1322 GCTCTGGACACAACACAAACAGTCATTTGGAATGGACCTATGGGAGTTTTCGAGATGGAA 1381
||| |||| || || || |||||||||||||||||||| ||||||||||||||| | |||
Sbjct 1313 GCTTTGGATACCACGCAGACAGTCATTTGGAATGGACCAATGGGAGTTTTCGAGTTTGAA 1372
Query 1382 AAGTTTGCGGCT-GGAACAGAGGCGATAGCGAATAAACTAGCAGAGCTAAGTGAAAAAGG 1440
|||||||| | ||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 1373 AAGTTTGCA-CAAGGAACTGAGGCGGTAGCGAATAAACTAGCAGAGCTAAGT-AAAAAGG 1430
Query 1441 -AGTGACAACGATAATAGGAGGAGGAGACTCAGTGGCTGCAGTGGAGAAAGTAGGAGTAG 1499
||||||||||||||||||||||||||| || ||||| |||||||||||||| |||||||
Sbjct 1431 GAGTGACAACGATAATAGGAGGAGGAGATTCGGTGGCAGCAGTGGAGAAAGTGGGAGTAG 1490
Query 1500 CAGGAGTCATGAGTCACATCTCCACTGGTGGTGGAGCCAGCTTGGAGCTGTTGGAAGGAA 1559
||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| |
Sbjct 1491 CAGGAGTCATGAGTCACATCTCCACAGGTGGTGGAGCCAGTTTGGAGCTCTTGGAAGGCA 1550
Query 1560 AAGTACTTCCCGGTGTGATCGCCCTTGATGAAGCAATC-CCAGTCACTGTTTA 1611
|||| |||||||||||| |||||||||||||||||| | |||||||| |||||
Sbjct 1551 AAGTGCTTCCCGGTGTGGTCGCCCTTGATGAAGCAA-CGCCAGTCACGGTTTA 1602
> Ahg477124 jgi|Araly1|477124|fgenesh2_kg.2__2254__AT1G79550.2
Length=1545
Score = 632 bits (342), Expect = 2e-180
Identities = 919/1194 (77%), Gaps = 54/1194 (5%)
Strand=Plus/Plus
Query 427 AGCTGATTTGAAGGGGAAGAAG-GTTTTCGTGAGAGCTGATCTCAATGTACCTCTCGATG 485
||| ||| |||| || ||| || || |||||||| | ||||||||| || ||| | ||||
Sbjct 163 AGCGGATCTGAAAGGAAAG-AGTGTGTTCGTGAGGGTTGATCTCAACGTTCCTTTGGATG 221
Query 486 ATAA-TC-AGACTATCACTGACGATACCAGAATCCGTGCCGCCATTCCAACGATCAAGTA 543
|||| || | || ||||| || || ||||| || |||||||| |||| || ||||||||
Sbjct 222 ATAACTCTA-AC-ATCACCGATGACACCAGGATTCGTGCCGCTGTTCCCACCATCAAGTA 279
Query 544 TTTGATTGAAAATGG-TGCTAAAGTTATCCTCTCCACTCATC-TGGGAAGGCCAAAGGGA 601
||||| | || || | ||| ||| | |||| || ||| | |||| | ||||| ||
Sbjct 280 CTTGATGGGTAACGGAT-CTAGGGTTGTTCTCTGCAGTCA-CTTGGGCCGCCCAAAAGGT 337
Query 602 GTCACCCCAAAGTTTAGTTTGGCTCCTCTTGTCCCTAGGCTCTCCGAGCTTCTTGGTATT 661
|| || || |||| || || |||||||| || || | || || ||||||||| ||
Sbjct 338 GTTACTCCTAAGTACAGCTTAAAGCCTCTTGTGCCGAGATTGTCTGAACTTCTTGGTGTT 397
Query 662 GAGGTCACG-AA-AGCTGATGATTGTATTGGCCCA-GAAGTGGA-AAGCTTGGTGGCTTC 717
||||| | || || |||| | |||||| | ||||| | ||| ||||| ||
Sbjct 398 GAGGT--TGTAATGGCAAATGACTCTATTGG-TGAGGAAGTCCAGAAG-TTGGTTGCAGG 453
Query 718 TCTACCTGAAGGTGGAGTTTTGCTTCTT-GAGAACGTCAGGTTTTACAAGGAGGAAGAGA 776
|||||||||||||| ||||||| |||| ||||| || ||||| ||| || |||||||
Sbjct 454 ACTACCTGAAGGTGGTGTTTTGC-TCTTGGAGAATGTGAGGTTCTACGCTGAAGAAGAGA 512
Query 777 AGAACGATCCTGAGTTTGCTAAGAAGCTTGCTTCTCTAGCTGACCTTTATGTCAATGATG 836
||||||||||||| ||||| |||||||||||| |||| || || | ||||| |||||||
Sbjct 513 AGAACGATCCTGAATTTGCAAAGAAGCTTGCTGCTCTTGCCGATGTCTATGTTAATGATG 572
Query 837 CTTTCGGAACTGCTCACAGAGCTCATGCTTCTACCGAAGGAGTCACTAAGTTCTTGAAGC 896
| ||||||||||||||||||||||||||||| || || || || | || | ||||||||
Sbjct 573 CCTTCGGAACTGCTCACAGAGCTCATGCTTCCACTGAGGGTGTTGCCAAATACTTGAAGC 632
Query 897 CTTCAGTTGCTGGTTTCCTTTTGCAAAAGGAACTGGACTACCTAGTTGGTGCTGTTTCAA 956
||||||||||||||||||| ||||||||||||| || ||||| ||||| ||||| |||
Sbjct 633 CTTCAGTTGCTGGTTTCCTCATGCAAAAGGAACTTGATTACCTTGTTGGAGCTGTGGCAA 692
Query 957 ACCCAAAGA-GACCATTTGCAGCCATAGTGGGTGGTTCCAAAG-TCTCATCCAAGATTGG 1014
|||| |||| | || ||||| ||||| || || || || |||| | ||| | ||||||||
Sbjct 693 ACCCCAAGAAG-CCTTTTGCTGCCATTGTTGGAGGCTC-AAAGGTTTCAACAAAGATTGG 750
Query 1015 AGTTATTGAATCGCTTCTGGAG-A-AGTGTGATATTCTTCTTCTTGGTGGTGGAATGATC 1072
|| ||||| || || || | | ||| ||| || || || || ||||| || |||||
Sbjct 751 TGTCATTGAGTCACT-CTTGTCCACAGT-TGACATCCTCCTGCTCGGTGGAGGTATGATT 808
Query 1073 TTCACATTCTACAAGGCACAGGGTCTTTCAGTTGGTTCGTCCCTTGTTGAAGAAGACAAG 1132
||||| |||||||||||||| || || ||||| || || |||||||| || || ||||||
Sbjct 809 TTCACTTTCTACAAGGCACAAGGACTCTCAGTCGGATCTTCCCTTGTGGAGGAGGACAAG 868
Query 1133 CTTGAATTGGCTACAGA-ACTCCTTGCCAAAG-CTAAGGCCAAAGGAGTCTCTCTTTTGT 1190
||||| ||||| | || |||| | | |||| | ||||||||||| |||||||| |||
Sbjct 869 CTTGACTTGGCAA-AGTCACTCATGGA-AAAGGCAAAGGCCAAAGGTGTCTCTCTCTTGC 926
Query 1191 TGCCAACAGATGTTGT-AGTTGCTGACAAGTTTGCTCCTGATGCCAACAGCAAGATTGTG 1249
| ||||| ||||| || | ||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 927 TCCCAACCGATGTGGTTA-TTGCTGACAAGTTTGCTCCAGATGCTAACAGCAAGATAGTG 985
Query 1250 CCTGC-ATCAGGCATTG-AGGACGGATGGATGGGACTGGACATTGGTCCAGACTCTATCA 1307
|| || | | | ||| || | || |||||||| || || ||||||||||| || ||||
Sbjct 986 CCAGCCA-CTGCCATCCCAG-ATGGCTGGATGGGTCTAGATATTGGTCCAGATTCCATCA 1043
Query 1308 AAACTTTCAACGAAGCTCTGGACACAACACAAA-C-AGTCATTTGGAATGGACCTATGGG 1365
| || |||| |||||||||||||||||| |||| | | |||| |||||||| || |||||
Sbjct 1044 AGACATTCAGCGAAGCTCTGGACACAAC-CAAAACCA-TCATCTGGAATGGTCCCATGGG 1101
Query 1366 AGTTTTCGAGATG-GAAAAGTTTGCGGCTGGAACAGAGGC-GATAGCGAATAAACTAGCA 1423
||||| || || || |||||||| |||||||| ||||| | |||| || | || |||
Sbjct 1102 TGTTTTTGA-ATTCGATAAGTTTGCAGCTGGAACTGAGGCCG-TAGCAAAGCAGCTTGCA 1159
Query 1424 GAGCTAAGTGAAAAAGGAGTGACAACGATAATAGGAGGAGGAGACTCAGTGGCTGCAGTG 1483
|| ||||| | ||| ||||| || || || || ||||| || ||||| || ||||| ||
Sbjct 1160 GAACTAAGCGGAAAGGGAGTAACCACAATCATTGGAGGGGGTGACTCTGTTGCTGCTGTC 1219
Query 1484 GAGAAAGTAGGAGTAGCAGG-A-GTCATGAGTCACATCTCCACTGGTGGTGGAGCCAGCT 1541
||||| || || | || | | | |||||||||||||| || || ||||| || || |
Sbjct 1220 GAGAAGGTCGGTTTGGCTGACAAG--ATGAGTCACATCTCTACCGGAGGTGGTGCTAGTT 1277
Query 1542 TGGAGCTG-TTGGAAGGAAAAGT-ACTTCCCGGTGTGATCGCCCTTGATGAAGC 1593
||||||| ||| | || || | |||||| || || |||| |||||||||||
Sbjct 1278 TGGAGCTTCTTG-AGGGGAA-GCCACTTCCAGGAGTCCTCGCTCTTGATGAAGC 1329
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66353206790
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5