BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12800.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478642 jgi|Araly1|478642|fgenesh2_kg.3__1343__AT3G12800.1 1452 0.0
> Ahg478642 jgi|Araly1|478642|fgenesh2_kg.3__1343__AT3G12800.1
Length=984
Score = 1452 bits (786), Expect = 0.0
Identities = 873/916 (95%), Gaps = 2/916 (0%)
Strand=Plus/Plus
Query 56 GTGTGTGGTTATGGACTCTCCGTTCAAACCTGATGTCGTCAGAGGTCAAGTGGCTCTCAT 115
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 17 GTGTGTGGTTATGGAGTCTCCGTTCAAACCTGATGTCGTCAGAGGTCAAGTGGCTCTCAT 76
Query 116 CACCGGTGGTGGATCCGGTATCGGTTTTGAGATCTCTTCTCAGTTTGGCAAACATGGAGC 175
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 77 CACCGGTGGTGGATCTGGCATCGGTTTTGAGATCTCTTCTCAGTTTGGCAAACATGGAGC 136
Query 176 TTCTATCGCTATCATGGGACGACGAAAACAAGTCCTCGATGACGCCGTCTCTGCTCTTCG 235
||||||||||||||||||||| || |||||||| ||||| ||||||||||| ||||| ||
Sbjct 137 TTCTATCGCTATCATGGGACGCCGGAAACAAGTACTCGACGACGCCGTCTCCGCTCTCCG 196
Query 236 ATCTCTTGGAATCCAGGCTATTGGATTGGAAGGTGATGTTCGTAAGCAAGAAGATGCGAG 295
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 ATCTCTTGGAATTCAGGCTATTGGATTGGAAGGTGATGTTCGTAAGCAAGAAGATGCGAC 256
Query 296 AAGAGTTGTGGAAGCAACTTTTCAGCATTTTGGTA-AACTTGATATTCTTGTTAACGCCG 354
|||||||||||||||||||| |||||||||||||| || | ||||||||||||||||| |
Sbjct 257 AAGAGTTGTGGAAGCAACTTATCAGCATTTTGGTAGAA-TCGATATTCTTGTTAACGCTG 315
Query 355 CTGCTGGCAATTTTCTGGCTGCTGCTGAGGATTTGTCTCCTAATGGCTTCAGAACAGTCT 414
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 CTGCTGGGAATTTTCTGGCTGCTGCTGAGGATTTGTCTCCTAATGGCTTCAGAACAGTCT 375
Query 415 TAGACATTGATGCGGTAGGAACATTCAACATGTGTCACGCAGCTCTCAAGTATCTTAAGA 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 TAGACATTGATGCGGTAGGAACATTCAACATGTGTCACGCAGCTCTCAAGTATCTTAAGA 435
Query 475 AAGGAGCGCCTGGAAGAGACTCATCAAGCGGTGGAGGTTCGATTATTAACATTAGCGCGA 534
|||||| |||||| ||||||||||||| |||||| ||||| ||||||||||| ||||| |
Sbjct 436 AAGGAGGGCCTGGGAGAGACTCATCAACCGGTGGCGGTTCCATTATTAACATAAGCGCCA 495
Query 535 CTTTGCACTACACGGCTTCTTGGTACCAAATACATGTCTCTGCAGCCAAGGCTGCAGTTG 594
||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 496 CTTTGCACTACACAGCTTCTTGGTATCAGATACATGTATCTGCAGCCAAGGCTGCAGTTG 555
Query 595 ATGCTACCACAAGAAACTTGGCATTGGAGTGGGGAACTGACTATGATATTAGAGTGAACG 654
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 556 ATGCTACAACAAGAAACTTGGCATTGGAGTGGGGAACTGACTACGATATTAGAGTGAACG 615
Query 655 GGATTGCTCCAGGTCCTATTGGAGGTACACCTGGAATGAGTAAACTTGTACCTGAGGAGA 714
||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 616 GGATTGCACCAGGTCCCATTGGAGGTACACCGGGAATGAGTAAACTTGTACCTGAAGAGA 675
Query 715 TTGAAAACAAAACCAGAGAGTACATGCCTCTTTATAAAGTTGGAGAGAAGTGGGATATCG 774
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 676 TTGAAAACAAAACCAGAGAGTACATGCCTCTTTATAAACTTGGAGAGAAGTGGGATATCG 735
Query 775 CTATGGCTGCACTCTACCTCAGCTGTGATTCTGGGAAATATGTGAGCGGACTAACAATGG 834
| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||
Sbjct 736 CAATGGCTGCACTCTACCTCAGCTGTGATTCTGGGAAATATGTGAACGGACTGACAGTGG 795
Query 835 TGGTAGATGGAGGACTGTGGCTTAGCAAACCTCGCCACTTGCCTAAAGAAGCGGTGAAGC 894
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 796 TGGTAGATGGAGGACTGTGGCTTAGCAAACCACGCCATTTGCCTAAAGAAGCGGTGAAGC 855
Query 895 AACTCTCTCGTGCGGTGGAGAAGAGGTCTAGGGCCAAGCCTGTTGGTCTCCCAACCAGCA 954
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 856 AACTCTCTCGTGCGGTGGAGAAGAGGTCTAGGGCCAAGCCTGTTGGTCTGCCGACCAGCA 915
Query 955 AGCTGTAGATCATTTG 970
||||||||||||||||
Sbjct 916 AGCTGTAGATCATTTG 931
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5