BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12820.1
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478645 jgi|Araly1|478645|fgenesh2_kg.3__1346__AT3G12820.1 1267 0.0
> Ahg478645 jgi|Araly1|478645|fgenesh2_kg.3__1346__AT3G12820.1
Length=852
Score = 1267 bits (686), Expect = 0.0
Identities = 803/858 (94%), Gaps = 13/858 (2%)
Strand=Plus/Plus
Query 1 ATGGGGAATAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGT 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGGAAAAGAAGAGCACCATGCTGTGACAAAAGCCAAGTGAAGAGAGGGCCATGGAGT 60
Query 61 GATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTCAAAAATGGTCATCAAAATTGGCGA 120
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 61 GATGAAGAAAGTGAAAGACTCAGATCTTTTATCCTTAAAAATGGTCATCACAATTGGAGA 120
Query 121 TCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTCTTCCCAAACTCGCTGGATTGATGAGATGCGGAAAGAGTTGTCGTCTAAGATGGATA 180
Query 181 AACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAGGAGGAGGAAGATACCATT 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 AACTATCTGAGACCAGGTCTCAAACGAGGCAACTTCACCAAAGAGGAGGAAGATACCATT 240
Query 241 ATCCACCTTCACCAAGCTTATGGAAACAAGTGGTCTAAGATCGCATCCAACTTCCCGGGA 300
||||| ||||||||| || ||||||||||||||||||||||||||||| |||| ||||||
Sbjct 241 ATCCAACTTCACCAAACTCATGGAAACAAGTGGTCTAAGATCGCATCCCACTTTCCGGGA 300
Query 301 AGGACAGACAACGAGATCAAGAATGTATGGAACACTCATCTCAAGAAGCGGTTGGTGAAG 360
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 301 AGGACAGACAACGAGATCAAGAATGTGTGGAACACTCATCTCAAGAAGCGATTGATGAAG 360
Query 361 AGGAGCATTTCATCATCATCATCCGATGTTACCAATCATTCAGTGTCTTCTACCTCTTCT 420
|| | ||| ||||||||||||| ||||||||| ||||||||||||| ||||||||||||
Sbjct 361 AGAA--ATT-CATCATCATCATCTGATGTTACCCATCATTCAGTGTCCTCTACCTCTTCT 417
Query 421 TCCTCTTCCTCAATCTCGTCAGTCTTGCAGGACGTTATTATTAAGAGTGAGAGGCCTAAC 480
|| |||||||||||||| ||| ||||| |||| |||||||||| || |||| |||||||
Sbjct 418 TCTTCTTCCTCAATCTCATCAATCTTGAAGGATGTTATTATTATCAGCGAGATGCCTAAC 477
Query 481 CAGGAAGAGGAGTTTGGGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTGGAT 540
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 478 CAGGAAGAGGAGTTTGAGGAAATCTTGGTGGAGCAAATGGCATGTGGATTTGAGGTTGAT 537
Query 541 GCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGGTTCCTCCTCCTATATCTAAA 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 538 GCACCACAATCACTAGAATGTCTCTTTGACGATAGCCAGATTCCTCCTCCTATATCTAAA 597
Query 601 CCAGACTCACTACAAACCCATGGGAAGTCATCAGATCACGAATTTTGGAGCCGACTGATT 660
|||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 598 CCAGACTCACTAGAAATCCATGGGAAATCATCAGATCACGAATTTTGGAGCCGACTGGTT 657
Query 661 GAACCAGGGTTCGATGATTACAATGAGTGGCTCA-TTTTCTTGGATAACCAAACTTGCTA 719
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 658 GAACCAGGGTTCGATGATTACAATGAGTGGCTCAGTTTT-TTGGATAACCAAACTTGCTA 716
Query 720 GAACACACAAGGAGTTGACCCATCATGTCTTATTGTTGCATTGTCTTTTTT-C--CTT-T 775
||||||| | |||||||| ||||||||||||| ||||||||||| |||||| | ||| |
Sbjct 717 GAACACA-A-GGAGTTGATCCATCATGTCTTACTGTTGCATTGTTTTTTTTTCATCTTCT 774
Query 776 GT-TTT-AGATAAATTGAGAACACACTGTTTTTGTAAAAGCTAGTATTGGAAACTAAAAT 833
| ||| |||||||||||||||||||||||||| |||||||||| | ||||||||| |||
Sbjct 775 TTCTTTTAGATAAATTGAGAACACACTGTTTTTCTAAAAGCTAGAAATGGAAACTAGAAT 834
Query 834 GTAAACGAGTCAGAAGCT 851
|||||| |||||||||||
Sbjct 835 GTAAACAAGTCAGAAGCT 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5