BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12830.1
Length=958
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478646 jgi|Araly1|478646|fgenesh2_kg.3__1347__AT3G12830.1 1016 0.0
Ahg895617 jgi|Araly1|895617|Al_scaffold_0006_3613 296 2e-79
> Ahg478646 jgi|Araly1|478646|fgenesh2_kg.3__1347__AT3G12830.1
Length=924
Score = 1016 bits (550), Expect = 0.0
Identities = 755/846 (89%), Gaps = 45/846 (5%)
Strand=Plus/Plus
Query 66 tctctctcAAAGTCACAACACGAAGACGATGAAGCAACTAATCCGTCGTCTCTCTCGCGT 125
||||||||||| ||| |||||||||| |||||||||||| ||||| ||||||||||||||
Sbjct 35 TCTCTCTCAAA-TCATAACACGAAGAAGATGAAGCAACTGATCCGCCGTCTCTCTCGCGT 93
Query 126 CGCTGATTCCGCTCAATACAGTCTCCTCCGTTCCGATTCACAGCGACCTAGCCGCCGTTC 185
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 94 CGCTGATTCCGCTCAATACAGTCTCCTCCGCTCCGATTCACAACGACCTAGCCGCCGTTC 153
Query 186 CGAATCCTTCCTCCGTTCTTCGGTGACTCGCCGCTCAAAGAAGCAAACCTCCTCTGTTCC 245
|||||| |||||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 154 CGAATCATTCCTCCGTTCTTCGGTGTCTCGCCGCTCAAAGAAGCAAACCTCTTCGGTTCC 213
Query 246 CGAAGGACACGTACCGGTCTACGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGCGCGGA 305
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 214 TGAAGGACACGTACCGGTCTACGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGCGCCGA 273
Query 306 GCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAAGAGTATGGTTA 365
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 274 GCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAGGAGTATGGTTA 333
Query 366 CGAGCAAAAAGGAGTTCTACAAATCCCTTGCCATGTCCTTGTCTTCGAACGAATCATGGA 425
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 334 CGAGCAAAAAGGAGTTCTACAAATCCCTTGCCATGTACTTGTCTTCGAACGAATCATGGA 393
Query 426 ATCGCTTCGTCTTGGACTTCCGGTACCGATTGATGTTCAGGATCTAATCGGTGACGGGAC 485
|||||||||||||||||||||||| ||||||||||| |||||||||||||| || | |||
Sbjct 394 ATCGCTTCGTCTTGGACTTCCGGTGCCGATTGATGTGCAGGATCTAATCGGCGATGAGAC 453
Query 486 TATTTGAAGAAGAAGCTTTTATTG--GAAGGAATCTTGGTAGTTAGAGAAGttttttttt 543
| ||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||
Sbjct 454 GAGTTGAAGAAGAAGCTTTTTTTTTAGAAGGAATCTTGGTAGTTAGACAAGTTATTTTTT 513
Query 544 CTTCTAGATCTGGTTGTTTTTGTTCAGATACT-ACTGAGTCATCATACTTCGTCGTCGTG 602
|||||||||||||||||||||||| |||||| | ||||||||||||||||||| | |
Sbjct 514 -TTCTAGATCTGGTTGTTTTTGTTCTGATACTGA-TGAGTCATCATACTTCGTCATT-T- 569
Query 603 TCGATGTAAATAGGTATATAATTTTTC--------CA-GGATCCAAAAGTGGAAGAGGAG 653
| |||||||||||||| ||||||||| || |||||||||||||||||| |||
Sbjct 570 T-GATGTAAATAGGTACATAATTTTTTTTTTGTTTCATGGATCCAAAAGTGGAAGAAGAG 628
Query 654 ACGCATTTAGGGAttttctttctctttgttgtttgcaaattttctaatttttt-cgccgg 712
||| |||||||| |||||||| |||| |||||| |||||||| |||||||||| ||||||
Sbjct 629 ACGAATTTAGGGGTTTTCTTTTTCTT-GTTGTT-GCAAATTTCCTAATTTTTTTCGCCGG 686
Query 713 ttttaaaaatcggtttgAAATTCTTGTGAAGtttttttATATGGAAAATTT-GCATCAGT 771
|||||| |||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct 687 TTTTAAGAATCGGTTTGAAATTCTTGTGAAGAAGTTTTATATGGAAAATTTTGCATCACT 746
Query 772 TTGGATCTC--T-T-T--A-A-TTTCTGGGTTTATTTGAC--ATGAT-T-A--C-AGttt 816
|||||||| | | | | | ||||||||||||| ||| ||||| | | | |||||
Sbjct 747 TTGGATCTTAATGTATGCACAATTTCTGGGTTTATATGAATTATGATGTGATTCCAGTTT 806
Query 817 -ttttt-GTTCAAGTTAA---ACAAAAAG-AG-G-ATTTTGATGTTTCACCGAGATTATC 868
||||| ||||||||| | |||||||| || | |||||||||||||||||| ||||||
Sbjct 807 ATTTTTTGTTCAAGTTTATTTACAAAAAGGAGAGGATTTTGATGTTTCACCGATATTATC 866
Query 869 GGCAGG 874
|| |||
Sbjct 867 GGAAGG 872
> Ahg895617 jgi|Araly1|895617|Al_scaffold_0006_3613
Length=237
Score = 296 bits (160), Expect = 2e-79
Identities = 178/187 (95%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 241 GTTCCCGAAGGACACGTACCGGTCTACGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGC 300
||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 49 GTTCCTGAAGGACACGTACTGGTCTATGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGC 108
Query 301 GCGGAGCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAAGAGTAT 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 GCCGAGCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAAGAGTAT 168
Query 361 GGTTACGAGCAAAAAGGAGTTCTACAAATCCCTTGCCATGTCCTTGTCTTCGAACGAATC 420
|| || |||||||||| |||||||||||||||||||||||| |||||||||||| |||||
Sbjct 169 GGATATGAGCAAAAAGAAGTTCTACAAATCCCTTGCCATGTACTTGTCTTCGAAAGAATC 228
Query 421 ATGGAAT 427
|||||||
Sbjct 229 ATGGAAT 235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35568681561
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5