BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12850.1 Length=1104 Score E Sequences producing significant alignments: (Bits) Value Ahg929007 jgi|Araly1|929007|scaffold_301464.1 673 0.0 > Ahg929007 jgi|Araly1|929007|scaffold_301464.1 Length=642 Score = 673 bits (364), Expect = 0.0 Identities = 512/581 (88%), Gaps = 19/581 (3%) Strand=Plus/Plus Query 46 TATTCACGAAACTACGAAGGACGAAACCTAGTGCTGAGGCTACTTCATATCGCAGAGAA- 104 ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| Sbjct 27 TATTCACGAAACTACAAAGGACGAAACCTAGTGCAAAAGCTACTTCATATCGCAGAGAAT 86 Query 105 ----TT---CTGTTGGCCCGATGTTCACTGACGATTTGGAACTTGAAGCCCTTCGACTTG 157 || |||||||||||||||||| ||| ||||||||| ||||| ||||||||||| Sbjct 87 TGTGTTGGGCTGTTGGCCCGATGTTCAGTGATGATTTGGAATTTGAATTCCTTCGACTTG 146 Query 158 CCTATGATCTTATCCGGAATGACGGAATTGTCTGTGACATGCGTTTGTTCACAGTTATAG 217 ||||| |||||||||||||||||||||| || |||||||||| ||||||||||||||||| Sbjct 147 CCTATAATCTTATCCGGAATGACGGAATCGTATGTGACATGCATTTGTTCACAGTTATAG 206 Query 218 CTGAAAAAATACAAGGCAGATTAGGAGAAGGTTATCTCTTGGATGAAAAATGGCGTCTTA 277 |||||| |||||||||| ||||| |||||||||||||||||||||| |||||||||||| Sbjct 207 CTGAAAGGATACAAGGCAAATTAGCAGAAGGTTATCTCTTGGATGAACAATGGCGTCTTA 266 Query 278 CTAAGAACAACAA-TTTCGTCAAACAAGACAGCATTCTAAGAAACGACTTAGAAAGT-GC 335 ||||| ||||||| ||| ||||||||||||| |||||||||| |||| ||||||| | || Sbjct 267 CTAAGGACAACAACTTT-GTCAAACAAGACAACATTCTAAGAGACGAGTTAGAAA-TAGC 324 Query 336 TACGGACGAACTCGAAAAAGACCGTCTTGCACTTCGTCAGTATTGGCTCCATTACCACTG 395 |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 325 TACGGACGAATTCGAAAAAGACCGTCTTGCACTTCGTCAGTATTGCCTCCATTACCACTA 384 Query 396 TGGCCAAATGGCGATCGTTTTCCGACCATATCCCCGGCAGGTCCAAACTATCGATGCTTA 455 |||||||||||| |||||||||||| ||| | |||||||||| |||||| |||||| ||| Sbjct 385 TGGCCAAATGGCAATCGTTTTCCGATCATTTACCCGGCAGGTTCAAACTGTCGATGTTTA 444 Query 456 CATGGCTACACTATTGGTGGCCCTCGAGACCCGCAACTTTGGGGAGCTTCCCCACCGAAG 515 |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 445 TATGGCTACTCTATTGGTGGCCCTCGAGACCCGCAACTTTGGGGAGCTTCGTCACCGAAG 504 Query 516 TGTCGAACAGATAGCTTACTGCAACGTAAAAAGGGCA-TA--T--GGCTTCAAAATTGAC 570 |||||| || |||||||||||| ||| |||||||| | || | || |||||| | ||| Sbjct 505 TGTCGAGCAAATAGCTTACTGCCACG-AAAAAGGG-AGTACGTACGGGTTCAAACTCGAC 562 Query 571 TGCTTTAAGTCTCTTTCTAATCTTTTAGAAAGCAAGTATCA 611 ||| ||||||||||| | |||| || |||| | ||||||| Sbjct 563 TGCGTTAAGTCTCTTGCGGATCTCTTGGAAAACGAGTATCA 603 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41134627443 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5