BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12850.1
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929007 jgi|Araly1|929007|scaffold_301464.1 673 0.0
> Ahg929007 jgi|Araly1|929007|scaffold_301464.1
Length=642
Score = 673 bits (364), Expect = 0.0
Identities = 512/581 (88%), Gaps = 19/581 (3%)
Strand=Plus/Plus
Query 46 TATTCACGAAACTACGAAGGACGAAACCTAGTGCTGAGGCTACTTCATATCGCAGAGAA- 104
||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 27 TATTCACGAAACTACAAAGGACGAAACCTAGTGCAAAAGCTACTTCATATCGCAGAGAAT 86
Query 105 ----TT---CTGTTGGCCCGATGTTCACTGACGATTTGGAACTTGAAGCCCTTCGACTTG 157
|| |||||||||||||||||| ||| ||||||||| ||||| |||||||||||
Sbjct 87 TGTGTTGGGCTGTTGGCCCGATGTTCAGTGATGATTTGGAATTTGAATTCCTTCGACTTG 146
Query 158 CCTATGATCTTATCCGGAATGACGGAATTGTCTGTGACATGCGTTTGTTCACAGTTATAG 217
||||| |||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct 147 CCTATAATCTTATCCGGAATGACGGAATCGTATGTGACATGCATTTGTTCACAGTTATAG 206
Query 218 CTGAAAAAATACAAGGCAGATTAGGAGAAGGTTATCTCTTGGATGAAAAATGGCGTCTTA 277
|||||| |||||||||| ||||| |||||||||||||||||||||| ||||||||||||
Sbjct 207 CTGAAAGGATACAAGGCAAATTAGCAGAAGGTTATCTCTTGGATGAACAATGGCGTCTTA 266
Query 278 CTAAGAACAACAA-TTTCGTCAAACAAGACAGCATTCTAAGAAACGACTTAGAAAGT-GC 335
||||| ||||||| ||| ||||||||||||| |||||||||| |||| ||||||| | ||
Sbjct 267 CTAAGGACAACAACTTT-GTCAAACAAGACAACATTCTAAGAGACGAGTTAGAAA-TAGC 324
Query 336 TACGGACGAACTCGAAAAAGACCGTCTTGCACTTCGTCAGTATTGGCTCCATTACCACTG 395
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 325 TACGGACGAATTCGAAAAAGACCGTCTTGCACTTCGTCAGTATTGCCTCCATTACCACTA 384
Query 396 TGGCCAAATGGCGATCGTTTTCCGACCATATCCCCGGCAGGTCCAAACTATCGATGCTTA 455
|||||||||||| |||||||||||| ||| | |||||||||| |||||| |||||| |||
Sbjct 385 TGGCCAAATGGCAATCGTTTTCCGATCATTTACCCGGCAGGTTCAAACTGTCGATGTTTA 444
Query 456 CATGGCTACACTATTGGTGGCCCTCGAGACCCGCAACTTTGGGGAGCTTCCCCACCGAAG 515
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 445 TATGGCTACTCTATTGGTGGCCCTCGAGACCCGCAACTTTGGGGAGCTTCGTCACCGAAG 504
Query 516 TGTCGAACAGATAGCTTACTGCAACGTAAAAAGGGCA-TA--T--GGCTTCAAAATTGAC 570
|||||| || |||||||||||| ||| |||||||| | || | || |||||| | |||
Sbjct 505 TGTCGAGCAAATAGCTTACTGCCACG-AAAAAGGG-AGTACGTACGGGTTCAAACTCGAC 562
Query 571 TGCTTTAAGTCTCTTTCTAATCTTTTAGAAAGCAAGTATCA 611
||| ||||||||||| | |||| || |||| | |||||||
Sbjct 563 TGCGTTAAGTCTCTTGCGGATCTCTTGGAAAACGAGTATCA 603
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41134627443
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5