BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12860.1
Length=1608
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478647 jgi|Araly1|478647|fgenesh2_kg.3__1348__AT3G12860.1 2492 0.0
Ahg474678 jgi|Araly1|474678|fgenesh2_kg.1__4632__AT1G56110.1 1288 0.0
> Ahg478647 jgi|Araly1|478647|fgenesh2_kg.3__1348__AT3G12860.1
Length=1607
Score = 2492 bits (1349), Expect = 0.0
Identities = 1529/1615 (95%), Gaps = 15/1615 (1%)
Strand=Plus/Plus
Query 1 AAACCCTAATTTCTCTTATTCTTCTCCGAAACGGAAACTGCATAAATACTCGATTTTCAA 60
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1 AAACCCTAATTTCTCTGATTCTTCTCCGGGACGGAAACTGCATAAATACTCGACTTTCAA 60
Query 61 ATCAATTTTGAAAAAGACGGCTAGGGTTTTTACAGAATTCTCTCTACAATGAAGAT-TTA 119
|||||||| |||||||||||||||||||||| || |||||||||||||| ||| ||
Sbjct 61 TTCAATTTTTAAAAAGACGGCTAGGGTTTTTATAG-CTTCTCTCTACAATGGCGATGTT- 118
Query 120 TCTTCTTTCCGAATCACCCTCCGGCTACGGATTGTTCGAGGGACACGGTTC-CGATGAGA 178
|||||||||||||||| |||||||||||||||||||||||| |||||| || ||||||||
Sbjct 119 TCTTCTTTCCGAATCATCCTCCGGCTACGGATTGTTCGAGGTACACGG-TCTCGATGAGA 177
Query 179 TTGGACAGAACACGGAGGCGGTTCGGAGCTCCGTCTCGGACCTTAGTCGGTTCGGGCGGG 238
||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 178 TTGGACAGAACACAGAGGCGGTTCGGAGCTCCGTCTCGGACCTAAGTCGGTTTGGGCGGG 237
Query 239 TCGTCCAGCTCACTGCTTTTCACCCGTTC-CAGTCTGCACTCGATGCTCTTAACCAAATC 297
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 238 TCGTCCAGCTCACTGCTTTTCACCC-ATCTCAGTCTGCACTCGATGCTCTTAACCAAATC 296
Query 298 AACGCCGTCTCTGAAGGATACATGAGCGATGAGCTGAGAAGTTTTCTGGAGCTGAATCTC 357
|||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||
Sbjct 297 AACGCCGTCTCTGAAGGATACATGAGTGATGAGCTGAGGAGTTTTCTGGAGTTGAATCTC 356
Query 358 CCGAAAGTGAAGGAAGGCAAGAAGCCCAAGTTTAGTTTGGGAGTGTCTGAGCCTAAAATC 417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 357 CCGAAAGTGAAGGAAGGCAAGAAGCCCAAGTATAGTTTGGGAGTGTCTGAGCCTAAAATC 416
Query 418 GGTTCTTGCATTTTTGAAGCTACCAAAATTCCTTGCCAGAGCAATGAGTTTGTCCATGAG 477
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 417 GGGTCTTGCATTTTTGAAGCTACAAAAATTCCTTGCCAGAGCAATGAGTTTGTCCATGAG 476
Query 478 CTCCTTAGAGGTGTGCGTCAGCATTTCGATAGGTTCATCAAAGACTTGAAGCCTGGTGAT 537
|| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 477 CTTCTTAGAGGTGTGCGTCAGCATTTCGATAGGTTCATCAAAGACCTAAAGCCTGGTGAT 536
Query 538 TTGGAAAAAGCTCAACTTGGACTAGCTCATAGCTACAGCAGAGCAAAGGTGAAGTTCAAT 597
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 537 TTGGAAAAAGCGCAACTTGGACTAGCTCATAGTTACAGCAGAGCAAAGGTGAAGTTCAAT 596
Query 598 GTTAACCGGGTGGATAACATGGTTATTCAAGCTATTTTCATGCTTGACACACTTGATAAG 657
|||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 597 GTTAACCGTGTGGATAACATGGTTATTCAAGCTATTTTCCTACTTGACACACTTGATAAG 656
Query 658 GATATCAATTCCTTTGCTATGAGAGTCAGAGAATGGTACTCATGGCACTTCCCTGAGCTT 717
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 657 GATATCAATTCCTTTGCTATGAGAGTCAGAGAATGGTACTCGTGGCACTTCCCTGAACTT 716
Query 718 GTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATTATCGTCGACAAG 777
||||||||||| |||||||||||||| || ||| |||||||||||||||||| ||||||
Sbjct 717 GTCAAGATAGTCAATGACAACTACCTTTATGCCCGAGTTTCAAAGATTATCGTGGACAAG 776
Query 778 TCAAAGTTGTCTGAAGAGCACATCCCTATGCTTACTGAAGCCCTGGGTGATGAAGATAAG 837
|| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 777 TCGAAGTTGTCTGAAGAGCACGTCCCTATGCTTACTGAAATCCTGGGTGATGAAGATAAA 836
Query 838 GCAAGAGAGGTTATTGAAGCTGGAAAAGCATCTATGGGCCAGGATTTATCACCGGTTGAT 897
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GCAAGAGAGGTTGTTGAAGCTGGAAAAGCATCTATGGGCCAGGATTTATCACCGGTTGAT 896
Query 898 CTGATCAATGTCCAGACCTTTGCTCAGAGAGTTATGGACCTTGCAGATTACAGGAAGAAG 957
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 897 CTGATCAATGTCCAGAGCTTTGCTCAGAGAGTTATGGACCTTGCCGATTACAGGAAGAAG 956
Query 958 CTCTATGATTATCTTGTTACTAAAATGAGTGACATTGCTCCAAATTTGGCGGCCTTGATC 1017
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 957 CTCTATGATTACCTTGTTACTAAAATGAGTGACATTGCTCCAAATTTGGCGTCCTTGATC 1016
Query 1018 GGAGAGATGGTTGGGGCTAGGTTGATTTCACATGCAGGAAGTCTGACAAATCTTGCCAAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GGAGAGATGGTTGGGGCTAGGTTGATTTCACATGCAGGAAGTCTGACAAATCTTGCCAAG 1076
Query 1078 TGCCCATCTTCAACCCTCCAGATTCTCGGTGCTGAGAAGGCACTTTTCAGGGCACTGAAA 1137
||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1077 TGCCCGTCTTCAACTCTCCAGATTCTTGGTGCTGAGAAGGCACTTTTCAGGGCGCTGAAA 1136
Query 1138 ACACGTGGAAACACACCCAAATATGGTCTAATATTCCATTCATCATTCATCGGGCGTGCA 1197
|| |||||||||||||||||||||||||||||||||||||| |||||||| | ||||||
Sbjct 1137 ACCCGTGGAAACACACCCAAATATGGTCTAATATTCCATTCGTCATTCATTAGCCGTGCA 1196
Query 1198 TCTGCTAAAAACAAGGGCCGTATTGCTCGTTTCCTTGCAAACAAGTGTTCCATTGCTTCC 1257
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1197 TCTGCTAAAAACAAGGGCCGTATTGCTCGTTTCCTTGCAAACAAGTGCTCCATAGCTTCC 1256
Query 1258 CGGATTGATTGTTTCTCAGATAACAGCACTACAGCTTTCGGTGAGAAACTAAGGGAACAA 1317
||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1257 CGGATCGATTGTTTCTCTGATAGCAGCACTACAGCTTTCGGTGAGAAACTAAGGGAACAA 1316
Query 1318 GTAGAGGAAAGACTTGACTTTTATGACAAAGGTGTTGCCCCACGTAAGAATGTTGATGTA 1377
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1317 GTGGAGGAAAGACTTGACTTTTATGACAAAGGTGTTGCCCCACGTAAGAATGTTGACGTA 1376
Query 1378 ATGAAAGAAGTGTTGGAAAATCTTgagaagaaagacgagggagaaaaaacagtggatgct 1437
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1377 ATGAAAGAAGTGATGGAAAATCTTGAGAAGAAAGACGAGGGAGAAAAAACAGTGGAGGCC 1436
Query 1438 tcggagaagaaaaagaagagaaagacagaggagaaggaggaggagaaggaagaggagaaa 1497
|| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1437 TCAGAGAAGAAAAAGAAGAGAAAGTCAGAGGAGAAGGAGGAGGAGAAGGAAGAGGAGAAA 1496
Query 1498 tcaaagaaaaagaaaaagaaaagcaaagcagtagaaggagaggaaTTGACAGCAACAGAT 1557
||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||
Sbjct 1497 TCAAAGAAAAAGAAAAAGAAAAGCAAAGCAGTAGAAGGAGAAGAATTGACA--A-CAGAG 1553
Query 1558 AATGG-C-CA-TA-GCAAGAAGAAGAAGAAAACTAAGTCACAAGATGATGAATAA 1608
||||| | || || | |||||||||||||||||||||||||||||||||||||||
Sbjct 1554 AATGGTCACAGTAAG-AAGAAGAAGAAGAAAACTAAGTCACAAGATGATGAATAA 1607
> Ahg474678 jgi|Araly1|474678|fgenesh2_kg.1__4632__AT1G56110.1
Length=1749
Score = 1288 bits (697), Expect = 0.0
Identities = 1160/1379 (84%), Gaps = 49/1379 (4%)
Strand=Plus/Plus
Query 172 GATGAGATTGGACAGAACACGGAGGCGGTTCGGAGCTCCGTCTCGGACCTTAGTCGGTTC 231
|||||||| ||||||||||| ||||||||||||| ||||||||| ||||| ||||| ||
Sbjct 93 GATGAGATCGGACAGAACACTGAGGCGGTTCGGACCTCCGTCTCCGACCTCAGTCGCTTT 152
Query 232 GGGCGGGTCGTCCAGCTCACTGCTTTTCA-CCCGTTCCAGTCTGCACTCGATGCTCTTAA 290
|| || || || |||||||| || ||||| ||| || ||||||| ||||||||||| ||
Sbjct 153 GGCCGTGTTGTTCAGCTCACAGCGTTTCATCCC-TTTGAGTCTGCTCTCGATGCTCTCAA 211
Query 291 CCAAATCAACGCCGTCTCTGAAGGAT-ACATGAGC-GATGAGCTGAGAAGTTTTCTGGAG 348
|||| ||||||||||||||||||| | |||| | |||||||| |||||||||||||||
Sbjct 212 CCAAGTCAACGCCGTCTCTGAAGG-TGTTATGA-CTGATGAGCTTAGAAGTTTTCTGGAG 269
Query 349 CTGAATCTCCCGAAAGTGAAGGAAGGCAAGAAGCCCAAGTTTAGTTTGGGAGTGTCTGAG 408
| ||||| || ||||| ||||| || |||||||||||||| || || ||| || |||||
Sbjct 270 TTAAATCTTCCTAAAGTCAAGGAGGGAAAGAAGCCCAAGTTCAGCTTAGGATTGGCTGAG 329
Query 409 CCTAAAATCGGTTCTTGCAT-T-TTTGAAGCTACCAAAATTCCTTGCCAGAGCAATGAGT 466
|||||| ||||||| ||| | |||||||| || ||||| || ||||||||||||||||
Sbjct 330 CCTAAACTCGGTTC--ACATATATTTGAAGCCACTAAAATCCCATGCCAGAGCAATGAGT 387
Query 467 TTGTCCATGAGCTCCTTAGAGGTGTGCGTCAGCATTTCGATAGGTTCATCAAAGACTTGA 526
|||| | |||||| || |||||||| || |||||||| |||||||| ||||| ||| | |
Sbjct 388 TTGTTCTTGAGCTTCTCAGAGGTGTACGCCAGCATTTTGATAGGTTTATCAAGGACCTAA 447
Query 527 AGCCTGGTGAT-TTGGAAAAAGCTCAACTTGGACTAGCTCATAGCTACAGCAGAGCAAAG 585
||||||||||| || |||||| |||| |||||| ||||||| |||||||||||||| |||
Sbjct 448 AGCCTGGTGATCTT-GAAAAATCTCAGCTTGGATTAGCTCACAGCTACAGCAGAGCCAAG 506
Query 586 GTGAAGTTCAATGTTAACCGGGTGGATAACATGGTTATTCAAGCTATTTTCATGCTTGAC 645
|||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 507 GTGAAGTTCAATGTTAACCGAGTGGATAACATGGTTATTCAAGCTATTTTCCTTCTTGAC 566
Query 646 ACACTTGATAAGGATATCAATTCCTTTGCTATGAGAGTCAGAGAATGGTACTCATGGCAC 705
|| ||||| |||||||||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct 567 ACGCTTGACAAGGATATCAATTCCTTTGCCATGAGAGTCAGGGAATGGTATTCGTGGCAC 626
Query 706 TTCCCTGAGCTTGTCAAGATAGTTAATGACAACTACCTCTACGCCAAAGTTTCAAAGATT 765
|||||||| || || |||||||| ||||||||||| || |||||| |||||||||||
Sbjct 627 TTCCCTGAACTAGTGAAGATAGTCAATGACAACTATCTTTACGCCCGCGTTTCAAAGATG 686
Query 766 ATCG-TCGACAAGTCAAAGTTGTCTGAAGAGCACATCCCTATGCTTACTGAAGCCCT-GG 823
|| | | ||||||||||||||| ||||||| |||||||| ||||||||||||| | | ||
Sbjct 687 ATTGAT-GACAAGTCAAAGTTGACTGAAGACCACATCCCAATGCTTACTGAAGTCTTAGG 745
Query 824 GTGATGAAGATAAGGCAAGAG-AGGTTATTGAAGCTGGAAAAGCATCTATGGGCCAGGAT 882
| |||||||||||||||| || ||||||| ||||||||||||||||| ||||||||||||
Sbjct 746 G-GATGAAGATAAGGCAA-AGGAGGTTATCGAAGCTGGAAAAGCATCCATGGGCCAGGAT 803
Query 883 TTATCACCGGTTGATCT-GATCAATGTCCAGACCTTTGCTCAGAGAGTTATGGACCTTGC 941
||||||||| |||| || |||||| || ||||| ||||| ||||||||||||||||||||
Sbjct 804 TTATCACCGCTTGA-CTTGATCAACGTTCAGACATTTGCCCAGAGAGTTATGGACCTTGC 862
Query 942 AGATTACAGGAAGAAGCTCTATGATTATCTTGTTACTAAAATGAGTGACATTGCTCCAAA 1001
|| ||||||||||||||||||||||||||||| ||||| ||||| |||||||| || ||
Sbjct 863 TGACTACAGGAAGAAGCTCTATGATTATCTTGTCACTAAGATGAGCGACATTGCCCCTAA 922
Query 1002 TTTGGCGGCCTTGATCGGAGAGATGGTTGGGGCTAGGTTGATTTCACATGCAGGAAGTCT 1061
|||||| || ||||| ||||||||||| || || | |||||||||||||| ||||||||
Sbjct 923 TTTGGCAGCTTTGATTGGAGAGATGGTCGGTGCCCGTTTGATTTCACATGCTGGAAGTCT 982
Query 1062 GACAAATCTTGCCAAGTGCCCATCTTCAACCCTCCAGATTCTCGGTGCTGAGAAGGCACT 1121
||| || ||||| || ||||||||||| ||||||||||| || || || |||||||||||
Sbjct 983 GACTAACCTTGCTAAATGCCCATCTTCTACCCTCCAGATCCTTGGAGCCGAGAAGGCACT 1042
Query 1122 TTTCAGGGCACTGAAAACACGTGGAAACACACCCAAATATGG-TCTAATATTCCATTCAT 1180
||||||||| || ||||| ||||||||||| ||||| ||||| | | || |||||||| |
Sbjct 1043 TTTCAGGGCGCTTAAAACTCGTGGAAACACTCCCAAGTATGGGT-TGATTTTCCATTCTT 1101
Query 1181 CATTCATCGGGCGTGCATCTGCTAAAAACAAGGGCCGTATTGCTCGTT-TCCTTGCAAAC 1239
| ||||| || || ||||||||||| |||||||||||||||||||| | || ||||||||
Sbjct 1102 CCTTCATTGGCCGAGCATCTGCTAAGAACAAGGGCCGTATTGCTCGCTATC-TTGCAAAC 1160
Query 1240 AAGTGTTCCATTGCTTCCCGGATTGATTGTTTCT-CAGATAACAGCA-CTACAGC-TTTC 1296
||||| || || || ||||||||||||||||| | | ||| ||| |||| || |||
Sbjct 1161 AAGTGCTCTATAGCATCCCGGATTGATTGTTT-TGCTGATGGT-GCAACTACTGCCTTT- 1217
Query 1297 GGTGAGAAACTAAGGGAACAAGTAGAGGAAAGACTTGACTTTTATGACAAAGGTGTTGCC 1356
|||||||| || | |||||||| || ||||| || || |||||||||||||||||||||
Sbjct 1218 GGTGAGAAGCTTCGCGAACAAGTTGAAGAAAGGCTAGAATTTTATGACAAAGGTGTTGCC 1277
Query 1357 CCACGTAAGAATGTTGATGTAATGAAAGAAGTGTTGGAAAATCTTg-agaagaaagacga 1415
||||| ||||| || ||||||||||| || ||| | || ||||| | | ||| |||||||
Sbjct 1278 CCACGCAAGAACGTGGATGTAATGAAGGAGGTGATAGAGAATCT-GCAAAAGCAAGACGA 1336
Query 1416 gggagaaaaa-a-c-agtggatgcttcggagaagaaaa--a-gaaga-gaaagacagagg 1468
|| || || | | |||||| || |||| |||||||| | ||||| ||| | || |||
Sbjct 1337 GGAAGGGAAGGAGCCAGTGGAGGCCTCGGTGAAGAAAAGCAAGAAGAAGAAGG-CAAAGG 1395
Query 1469 a-gaag-g-aggaggagaagg-aa-g-aggag-a-aa-tcaaagaaaaagaaaaagaaa 1518
|||| | | |||| | || || | ||||| | || ||| |||||||||| ||||||
Sbjct 1396 GTGAAGAGGAAGAGGTGGTGGCAATGGAGGAGGACAAGTCAGAGAAAAAGAAGAAGAAA 1454
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60258767590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5