BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12870.1
Length=621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929009 jgi|Araly1|929009|scaffold_301466.1 977 0.0
> Ahg929009 jgi|Araly1|929009|scaffold_301466.1
Length=667
Score = 977 bits (529), Expect = 0.0
Identities = 595/626 (95%), Gaps = 8/626 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCAGATCAGAGCACGAATCCACCGATCATGGAGGCAAAGACAAGACATCCTCTT 60
|||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct 21 ATGGCGTCAGATCAGAGCACAAATCCACCGATCATGGAGCCAAAGACGAGACATCCTCTT 80
Query 61 CACCAGATCGCAGATACACCAACACACAAGCTTCTCCTGAAACAATGGTTAAAAGAAGAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CACCAGATCGCAGATACACCAACACACAAGCTTCTCCTGAAACAATGGTTAAAAGAAGAA 140
Query 121 GAGCTAATTCTAAGCCGTGTCTCTCACAAAGAATCTCAGATCGATTCTGTTCGAAGAGAA 180
|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 141 GAGCTAATCCTCAGCCGTGTCTCTCACAAAGAATCTCAGATCGATTCCGTTCGAAGAGAA 200
Query 181 ATCACTCAGctctacatcttcttctttctcttccactccatttctctgctacttctcttc 240
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 ATCACTCAGCTTTATATCTTCTTCTTTCTCTTCCACTCCATTTCTCTGCTACTTCTCTTC 260
Query 241 cacgc-t-t-cttcatcctcatcttcctctGCTTCT--T-CCAGTGCTTGTAAAAGATCA 294
||||| | | ||||||| ||| |||||||||||||| | ||||||||||||||||||||
Sbjct 261 CACGCCTCTTCTTCATCATCACCTTCCTCTGCTTCTGCTTCCAGTGCTTGTAAAAGATCA 320
Query 295 TGGATCCCTTCACTCTGCGCTCTGCTATCTTCCTTGGGGATCATTTGGGCGGT-ACGGTA 353
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||| | ||||
Sbjct 321 TGGATCCCTTCACTTTGCGCTCTGCTATCTTCGTTGGGAATCATTTGGGCGGTGA-GGTA 379
Query 354 CAAATCTGAAGTGGAATCGCATCTTGAGAAGTTGTTGGAGAGGGAGAAAGAAGATGCGAA 413
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 380 CAAATCGGAAGTGGAATCGCATCTTGAGAAGTTGTTAGAGAGGGAGAAAGAAGATGCGAA 439
Query 414 GCTGTTGCGTAAATGTGTTGAAGAGTTGAAGAAGAAAGGTATCGAATTTGATTTGCTTAA 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GCTGTTGCGTAAATGTGTTGAAGAGTTGAAGAAGAAAGGTATCGAATTTGATTTGCTTAA 499
Query 474 GGAAGTGGATGCGCTTCGTAGAGCCAAGAGTTTAAGAGTTGAGTCGAAGCCTGTGAAGAA 533
|||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||| |||
Sbjct 500 GGAAGTTGATGCTCTTCGTAGAGCAAAGAGTTTGAGAGTTGAGTCCAAGCCTGTGAGGAA 559
Query 534 ATGGTCTGCTAGGGATTTTGTGACGCTCTTCTTCTTCTCTGTTTCGTGTTTGGTTCTTGC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 ATGGTCTGCTAGGGATTTTGTGACGCTCTTCTTCTTCTCTGTTTCGTGTTTGGTTCTTGC 619
Query 594 CATGATTAGACTCATTCTCTGCGATT 619
||||||||| || |||||||||||||
Sbjct 620 CATGATTAGGCTTATTCTCTGCGATT 645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22721258532
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5