BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12880.1
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478649 jgi|Araly1|478649|fgenesh2_kg.3__1350__AT3G12880.1 972 0.0
> Ahg478649 jgi|Araly1|478649|fgenesh2_kg.3__1350__AT3G12880.1
Length=707
Score = 972 bits (526), Expect = 0.0
Identities = 650/709 (92%), Gaps = 12/709 (2%)
Strand=Plus/Plus
Query 1 AAAGTGAAGAGTGTAATAACTAATAGGCATGAACaaaaaaaTGGCTTTGCTTGCAAAACT 60
||||| || |||||||||||||||| || |||||||||||||||||||||||||||| |
Sbjct 1 AAAGTTAAAAGTGTAATAACTAATAAGCGCGAACAAAAAAATGGCTTTGCTTGCAAAAAT 60
Query 61 TCTTATCCTCACCACACTTGTAACAACAATATCAGTAATATCCAGAGCCAATGAAGAGCT 120
|||||| ||||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct 61 TCTTATTCTCACCACACTTGTAACAACAGTATCAGTAACCTCTAGAGCCAATGAAGAGCT 120
Query 121 AATGATGCAACAATGTCACAACTCTGACAATCCCACCTTGTGTCTTCGCTGTCTAAGCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 121 AATGATGCAACAATGTCACAACTCTGACAATCCCACCTTGTGTCTTCGTTGTCTAAACTC 180
Query 181 CGACCCTGGTTCTCATGAGGCCGACAAAGTAGGACTGGCTCGTATCATCCTCAAATGCAT 240
|||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 CGACCCCACTTCTCATGAAGCCGACAAAGTTGGACTGGCTCGTATCATCCTCAAATGCAT 240
Query 241 CAACTCACACCTCCTTGTTCTCACCAAGAACGCTTCCACTTTGGGCTCGCAGCACTACCA 300
|||||| || |||||| | |||||| ||||| ||||||||||||||||||| |||||||
Sbjct 241 CAACTCTCAGCTCCTTATCCTCACCCAGAACACTTCCACTTTGGGCTCGCAACACTACCG 300
Query 301 GAATCCAAATACTGCAGCAGCGTTGAAGCAGTGCGGTTTGGGTTTCTCAACGGCTAAGCA 360
|||||| || ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 301 GAATCCCAAGGCTGCAGCAGCGTTGAAGCAGTGCGGTTTGGGTTTCTCGACAGCTAAGCG 360
Query 361 TGGCGTGGGAGAGGCCGACACTCAACTTATAACCGGAGATTACGACAAGGCTGCGTATGA 420
||||||||||||||||||| |||| |||||||||||||||||||||||||| ||| ||||
Sbjct 361 TGGCGTGGGAGAGGCCGACGCTCACCTTATAACCGGAGATTACGACAAGGCCGCGAATGA 420
Query 421 CGTCAGCGTGAAGGTGGTGAATCCTCCGGTATCGTGCCGCAACAGTCTCGAGGCACTCAA 480
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CGTCAGCGTGAAAGTGGTGAATCCTCCGGTATCGTGCCGCAACAGTCTCGAGACACTCAA 480
Query 481 CATTCAAGTCCCTTCAAGTTTCCGTTACCATATGGATGTATACTTGGCGTTGACTCAAGC 540
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 481 CATCCAAGTCCCTTCAAGTTTCCGTTACCATATGGATGTTTACTTGGCGTTGACTCAAGC 540
Query 541 TCTCCTCAGGATCGTTGATCGCTTCTAGATAGGTTTTTGTTTCTCCAACAGTGTTTGTCT 600
|||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct 541 TCTCCTCAGGATCGTTGATCGCTTCTAGATAG-TTTATGTTTCTTCAACAGTGTTTGTCT 599
Query 601 TATCCATATATCATGAGTGACTTTAA-T-T--C----CC-TCAAATATAAA-TCCAAGTT 650
|||| |||||| || ||||||||||| | | | || || ||| |||| || |||||
Sbjct 600 TATCGATATATTATCAGTGACTTTAACTATGTCTAGGCCCTCTAAT-TAAAATCAAAGTT 658
Query 651 TGCTTCTTCTTGTTATCCGTTCAAGATTGAATGCAAAATAGTGACACCT 699
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 TGCTTCTTCTTGTTATCCGTTCAAGATTGAATGCAAAATAGTGACACCT 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25809214809
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5