BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12890.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478650 jgi|Araly1|478650|fgenesh2_kg.3__1351__AT3G12890.1 1520 0.0
> Ahg478650 jgi|Araly1|478650|fgenesh2_kg.3__1351__AT3G12890.1
Length=948
Score = 1520 bits (823), Expect = 0.0
Identities = 908/948 (96%), Gaps = 9/948 (1%)
Strand=Plus/Plus
Query 23 AAATGGCATCATCTCTTCCTCAGTTCTACGCTGATTTCACAACATTTTCCTGCGAGACTT 82
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 1 AAATGGCATCATCTCTTCCTCAGTTCTACGCTGATTTCACAACATTTTCCGGTGAGACTT 60
Query 83 CTTCGCAGTTTCACGGCTCTTCTTCATGTCCTGACGTGGACTCTTCGTTATCCAGCTACC 142
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 61 CTTCGCAGTTTCACGGCTCTTCTTCATGTCCCGACGTGGACTCCTCGTTATCCAGCTACC 120
Query 143 TCGACGACTGTTATGGCTCCTTCAACACCTCTTCTAATCCAGAATCCATCTTTGTACCCC 202
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 TTGACGACTGTTATGGCTCCTTCAATACCTCTTCTAATCCAGAATCCATCTTTGTACCCC 180
Query 203 AAGTCTTTGGGATTTCTGACGTCTCTGTGCCTGAATACAACAATTATTACCAGAAAATGA 262
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGTTTTTGGTATTTCTGACGTCTCTGTGCCTGAATACAACAATTATTACCAGAAAATGA 240
Query 263 GTGTGAATAATGCCACACATTACTTTCATGGTGGAGATCATCAAGAATACTACGGCTTTT 322
||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||
Sbjct 241 GTGTGAATAATGCCACACAATACTTTCATGGTGGGGATCATCAAGAATACTACGCCTTTT 300
Query 323 CACCGGAGATCAAGCCCTTGTTCCGTCCGGCCACAGGAGAGCAATCTTGGGGAAATAGTG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACCGGAGATCAAGCCCTTGTTCCGTCCGGCCACAGGAGAGCAATCTTGGGGAAATAGTG 360
Query 383 AAGGAGGGATACAAGCTGAGCCAAATACAAAAGTGGGACGCTATTCGGTGGAGGAACGTA 442
||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||
Sbjct 361 AAGGAGGGATACAGGCTGAGCCAAACACAAAAGTGGGACGCTACTCGGTGGAAGAACGTA 420
Query 443 AAGACAGAATCATGAGGTACTTGAAGAAGAAGAACCAACGCAACTTCAATAAGACCATCA 502
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 421 AAGACAGAATCATGAGGTACTTGAAGAAGAAGAACCAGCGCAACTTCAATAAGACCATCA 480
Query 503 AGTATGTGTGTCGTAAAACCCTAGCCGACAGGCGTGTTCGTGTTCGCGGCCGATTTGCTA 562
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 481 AGTATGTGTGTCGTAAAACCCTAGCCGACCGACGTGTTCGTGTTCGCGGCCGATTTGCTA 540
Query 563 GAAACAATGACACATGTGAAGAACAACCTCACATGTCTAAGAATCACAACAACCATTCTG 622
|||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 541 GAAATAATGACACATGTGAAGAACAATCTCACATGTCAAAGAATCACAACAACCATTCTG 600
Query 623 AAAAAGAGGAAGATATGTTTTCAGGATCAGACGACTATCTAATCCAGATGGAACACGATG 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AAAAAGAGGAAGATATGTTTTCAGGATCAGACGACTATCTAATCCAGATGGAACACGATG 660
Query 683 ACGGATGGCTTCACGAAGCAATGTCCAATCTGATTCCTTTTCCTTGTGAATTTGACGCTC 742
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 661 ACGGATGGCTTCACGAAGCAATGTCTAATCTGATTCCTTTTCCTTGTGAATTTGACGCTC 720
Query 743 CTGGAGATGCTCATCATCCAACCAATTGGAGCTTCTGATGTCACTACCTATCTCATTTAC 802
||||||||||||||||||||| || |||||| |||||||||||||||| |||||||||||
Sbjct 721 CTGGAGATGCTCATCATCCAAACACTTGGAGTTTCTGATGTCACTACCCATCTCATTTAC 780
Query 803 TTCCGAATCAATTAATGTCTCTAGATATTAAGTTT-CATCAGTTAGTTTAGTTTTAC-TA 860
||||||||||||||||||| || | |||||| ||| ||||||||||||||||||||| ||
Sbjct 781 TTCCGAATCAATTAATGTCGCTGGCTATTAAATTTTCATCAGTTAGTTTAGTTTTACGTA 840
Query 861 --A-GCAGCTTATTTATTTTATGGTAGATTTATCATATTGTACTTAATTGTTCTTGGGGT 917
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 841 CCAAGCAGCTTATTTATTTTATGGTAGATTTATCATATTGTACTTAATTATTCTTGGGGT 900
Query 918 TATTGAACATGAAGATT----CTGTCTAGTGAATAAATAAAAGAACTT 961
||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 901 TATTGAACATGAAGATTAATTCTGTCTAGTGAATAAATAAAAGAACTT 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5