BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12900.1
Length=1074
Score E
Sequences producing significant alignments: (Bits) Value
Ahg341402 jgi|Araly1|341402|fgenesh1_pg.C_scaffold_3001165 1812 0.0
> Ahg341402 jgi|Araly1|341402|fgenesh1_pg.C_scaffold_3001165
Length=1074
Score = 1812 bits (981), Expect = 0.0
Identities = 1043/1074 (97%), Gaps = 0/1074 (0%)
Strand=Plus/Plus
Query 1 ATGGGTATCAATTTCGAGGACCAAACCACATTGTTCAATTTCGTGGTCAGAGAAGGTAAC 60
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGGCTATCAATTTCGAGGACCAAACCACATTGTTCAATTTCGTGGTCACAGAAGGTAAC 60
Query 61 GGCGTGAAAGGAATGATAGACTCGGGCCTCTCTAGTGTTCCACGGCCCTTCGTCCAGCCT 120
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 GGCGTGAAAGGAATGATTGACTCGGGCCTCTCTAGTGTTCCACAGCCCTTCGTCCAGCCT 120
Query 121 CTCTCTGAGCGAATCCCGACCCAAAAAGCCCTTACGTGTGAGGCTACCCAGCCAATCGAT 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCTCTGAGCGAATCCCGACCGAAAAAGCCCTTACGTGTGAGGCTACCCAGCCAATCGAT 180
Query 181 CTTTCCAACCTAGACGGCCCACAACACAAGGAGGTGGCCAAGCAGATTGTCGAAGCTGCC 240
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 181 CTTTCCAAGCTAGACGGCCCACAACACAAGGAGGTGGCCAAGCAGATCGTCGAAGCTGCC 240
Query 241 GAGACACTTGGCTTCTTCCAGGTGGTGAACCATGGTGTTTCGGTGGAGCTGCTGGAGTTG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GAGACACTTGGCTTCTTCCAGGTGGTGAACCATGGTGTTTCGGTGGAGCTGCTGGAATTG 300
Query 301 CTAAAATCGTCGGCTCATGAGTTTTTTGCACAAGCTCCTGAGGAAAAATCGATGTACCTG 360
||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 301 CTAAAATCGTCCGCTCATGAGTTTTTTGCACAAGCTCCAGAGGAAAAAGCGATGTACCTG 360
Query 361 AAGGAAGTGAGTCCAAGCAAGCTGGTTAAGTACGGAACGAGCTTTGTGCCAGATAAGGAG 420
|| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 361 AAAGAAGTGAGTCCAAGCAAGCTGGTTAAGTACGGAACGAGCTTCGTACCAGATAAGGAG 420
Query 421 AAGGCGATTGAGTGGAAGGATTATGTGAGCATGCTTTACACCAATGACAGTGAGGCTCTT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAGGCGATTGAGTGGAAGGATTATGTGAGCATGCTTTACACCAATGACAGTGAGGCTCTT 480
Query 481 CAACACTGGCCTCAACCATGCAGGGAGGTGGCACTTGAGTTCCTAAATTCATCGATGGAA 540
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 481 CAACACTGGCCTCAACCATGCAGGGAGATGGCACTTGAGTTCCTAAAATCATCGATGGAA 540
Query 541 ATGGTGAAAAATGTAGTTAACATTCTGATGGAGAATGTTGGAGTGACACTAGAAGAAGAG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 ATGGTGAAAAATGTAGTTAACATTCTGATGGAGAATGTTGGAGTGACACTAGAAGAAGAG 600
Query 601 AAAATGAATGGTTTGATGGGAACCAAGATGGTCAACATGAACTACTACCCTACTTGTCCG 660
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AAAATGAATGGTTTGATGGGAACCAAGATGGTCAACATGAACTACTACCCCACTTGTCCG 660
Query 661 AGCCCCGAGCTGACCGTCGGCGTCGGCCGTCACTCAGACATGGGAATGTTGACCGTTTTA 720
||||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 661 AGCCCGGAGCTGACCATTGGCGTCGGCCGTCACTCCGACATGGGAATGTTGACCGTTTTA 720
Query 721 TTACAAGACGGCATTGGTGGTCTCTACGTTAAACTAGACAACGGTGAATGGGCCGAGATC 780
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTACAAGACGGCATTGGCGGTCTCTACGTTAAACTAGACAACGGTGAATGGGCCGAGATC 780
Query 781 CCTCCTGTCCATGGAGCTTTGGTCATCAACATCGGCGACACTTTGCAGATTTTGAGCAAT 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCTCCTGTCCATGGAGCTTTGGTCATCAACATCGGCGACACTTTGCAGATTTTGAGCAAT 840
Query 841 GGGAAGTACAAAAGTGCGGAGCATAGGGTTCGAACCACAAACATCGGATCAAGAGTCTCT 900
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 841 GGGAAGTACAAAAGTGCTGAGCATAGGGTTCGAACTACAAACATCGGATCAAGAGTCTCT 900
Query 901 GTGCCCATTTTCACGGCACCAAATCCCTCCCAGAAGGTCGGTCCCTTGCCGGAAGTTGTG 960
|||||||||||||||||||| ||||||||| ||||| ||||||| |||||||||||||||
Sbjct 901 GTGCCCATTTTCACGGCACCTAATCCCTCCGAGAAGATCGGTCCGTTGCCGGAAGTTGTG 960
Query 961 AAACGCGACGGAGTGGCTCGTTACAAGGAGTTTTTGTTTCAAGACTACATGAATAACTTC 1020
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 961 AAACGCGACGGAGTGGCTCGTTACAAGGAGATTTTGTTTCAAGACTACATGAATAACTTC 1020
Query 1021 TTCGGCCAACCACACGACGGCAAAAAATCTCTCGACTTCGCACGTGCCGAGTGA 1074
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1021 TTCGGCCAACCACACGACGGAAAAAAATCTCTGGACTTCGCACGTGCCGAGTGA 1074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39990939933
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5