BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT3G12900.1 Length=1074 Score E Sequences producing significant alignments: (Bits) Value Ahg341402 jgi|Araly1|341402|fgenesh1_pg.C_scaffold_3001165 1812 0.0 > Ahg341402 jgi|Araly1|341402|fgenesh1_pg.C_scaffold_3001165 Length=1074 Score = 1812 bits (981), Expect = 0.0 Identities = 1043/1074 (97%), Gaps = 0/1074 (0%) Strand=Plus/Plus Query 1 ATGGGTATCAATTTCGAGGACCAAACCACATTGTTCAATTTCGTGGTCAGAGAAGGTAAC 60 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 ATGGCTATCAATTTCGAGGACCAAACCACATTGTTCAATTTCGTGGTCACAGAAGGTAAC 60 Query 61 GGCGTGAAAGGAATGATAGACTCGGGCCTCTCTAGTGTTCCACGGCCCTTCGTCCAGCCT 120 ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 61 GGCGTGAAAGGAATGATTGACTCGGGCCTCTCTAGTGTTCCACAGCCCTTCGTCCAGCCT 120 Query 121 CTCTCTGAGCGAATCCCGACCCAAAAAGCCCTTACGTGTGAGGCTACCCAGCCAATCGAT 180 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 121 CTCTCTGAGCGAATCCCGACCGAAAAAGCCCTTACGTGTGAGGCTACCCAGCCAATCGAT 180 Query 181 CTTTCCAACCTAGACGGCCCACAACACAAGGAGGTGGCCAAGCAGATTGTCGAAGCTGCC 240 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 181 CTTTCCAAGCTAGACGGCCCACAACACAAGGAGGTGGCCAAGCAGATCGTCGAAGCTGCC 240 Query 241 GAGACACTTGGCTTCTTCCAGGTGGTGAACCATGGTGTTTCGGTGGAGCTGCTGGAGTTG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 241 GAGACACTTGGCTTCTTCCAGGTGGTGAACCATGGTGTTTCGGTGGAGCTGCTGGAATTG 300 Query 301 CTAAAATCGTCGGCTCATGAGTTTTTTGCACAAGCTCCTGAGGAAAAATCGATGTACCTG 360 ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||| Sbjct 301 CTAAAATCGTCCGCTCATGAGTTTTTTGCACAAGCTCCAGAGGAAAAAGCGATGTACCTG 360 Query 361 AAGGAAGTGAGTCCAAGCAAGCTGGTTAAGTACGGAACGAGCTTTGTGCCAGATAAGGAG 420 || ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| Sbjct 361 AAAGAAGTGAGTCCAAGCAAGCTGGTTAAGTACGGAACGAGCTTCGTACCAGATAAGGAG 420 Query 421 AAGGCGATTGAGTGGAAGGATTATGTGAGCATGCTTTACACCAATGACAGTGAGGCTCTT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 AAGGCGATTGAGTGGAAGGATTATGTGAGCATGCTTTACACCAATGACAGTGAGGCTCTT 480 Query 481 CAACACTGGCCTCAACCATGCAGGGAGGTGGCACTTGAGTTCCTAAATTCATCGATGGAA 540 ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 481 CAACACTGGCCTCAACCATGCAGGGAGATGGCACTTGAGTTCCTAAAATCATCGATGGAA 540 Query 541 ATGGTGAAAAATGTAGTTAACATTCTGATGGAGAATGTTGGAGTGACACTAGAAGAAGAG 600 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 ATGGTGAAAAATGTAGTTAACATTCTGATGGAGAATGTTGGAGTGACACTAGAAGAAGAG 600 Query 601 AAAATGAATGGTTTGATGGGAACCAAGATGGTCAACATGAACTACTACCCTACTTGTCCG 660 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 601 AAAATGAATGGTTTGATGGGAACCAAGATGGTCAACATGAACTACTACCCCACTTGTCCG 660 Query 661 AGCCCCGAGCTGACCGTCGGCGTCGGCCGTCACTCAGACATGGGAATGTTGACCGTTTTA 720 ||||| ||||||||| | ||||||||||||||||| |||||||||||||||||||||||| Sbjct 661 AGCCCGGAGCTGACCATTGGCGTCGGCCGTCACTCCGACATGGGAATGTTGACCGTTTTA 720 Query 721 TTACAAGACGGCATTGGTGGTCTCTACGTTAAACTAGACAACGGTGAATGGGCCGAGATC 780 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TTACAAGACGGCATTGGCGGTCTCTACGTTAAACTAGACAACGGTGAATGGGCCGAGATC 780 Query 781 CCTCCTGTCCATGGAGCTTTGGTCATCAACATCGGCGACACTTTGCAGATTTTGAGCAAT 840 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 CCTCCTGTCCATGGAGCTTTGGTCATCAACATCGGCGACACTTTGCAGATTTTGAGCAAT 840 Query 841 GGGAAGTACAAAAGTGCGGAGCATAGGGTTCGAACCACAAACATCGGATCAAGAGTCTCT 900 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 841 GGGAAGTACAAAAGTGCTGAGCATAGGGTTCGAACTACAAACATCGGATCAAGAGTCTCT 900 Query 901 GTGCCCATTTTCACGGCACCAAATCCCTCCCAGAAGGTCGGTCCCTTGCCGGAAGTTGTG 960 |||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||| Sbjct 901 GTGCCCATTTTCACGGCACCTAATCCCTCCGAGAAGATCGGTCCGTTGCCGGAAGTTGTG 960 Query 961 AAACGCGACGGAGTGGCTCGTTACAAGGAGTTTTTGTTTCAAGACTACATGAATAACTTC 1020 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 961 AAACGCGACGGAGTGGCTCGTTACAAGGAGATTTTGTTTCAAGACTACATGAATAACTTC 1020 Query 1021 TTCGGCCAACCACACGACGGCAAAAAATCTCTCGACTTCGCACGTGCCGAGTGA 1074 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 1021 TTCGGCCAACCACACGACGGAAAAAAATCTCTGGACTTCGCACGTGCCGAGTGA 1074 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39990939933 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5