BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12910.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478652 jgi|Araly1|478652|fgenesh2_kg.3__1353__AT3G12910.1 1454 0.0
> Ahg478652 jgi|Araly1|478652|fgenesh2_kg.3__1353__AT3G12910.1
Length=956
Score = 1454 bits (787), Expect = 0.0
Identities = 907/963 (94%), Gaps = 16/963 (2%)
Strand=Plus/Plus
Query 1 GTGAGTCCAAAGAGCAAAAAGGAAGAAATAG--AAACCAAAGCCATGGAGAAGATGATAG 58
||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct 1 GTGAGTCCAAAGAGCAAAAAGGAGGAAATAGAAAAATCAAAGCCATGGAGAAGATGATAG 60
Query 59 AACCACGGGACAACACAAGAGAATCAGAAGATGAGGATGCGTTAAAGCTTCCAGGGTTTA 118
|| |||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 61 AATCACGGGACAACACAAGAGAATCAGAAGACGAGGAAGTGTTAAAGCTTCCAGGGTTTA 120
Query 119 GGTTTCATCCGACGGATGAGGAGCTTGTAGGGTATTATCTCTCTAAAAAAGTGCTTCTCa 178
|||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 121 GGTTTCATCCAACGGACGAGGAGCTTGTAGGGTATTATCTCTCTAAGAAAGTACTTCT-A 179
Query 179 aaaaaa-CGAGCAAGATTGATGAGATCGTCAGCCAAATTGATATCTATAAATTTGATCCG 237
|||||| | |||||||| |||||||| || |||||||| |||||||||||||| ||||||
Sbjct 180 AAAAAACCAAGCAAGATCGATGAGATTGTTAGCCAAATCGATATCTATAAATTCGATCCG 239
Query 238 TGGGATCTTCCAAGGTCGAGGAATACAGAGAAGGAGAGCTACTTCTTTTGTAAGAGAGGA 297
|||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||
Sbjct 240 TGGGATCTTCCAAGGTCGAGGAATACGGAGAAGGAAAGCTACTTCTTCTGCAAGAGAGGA 299
Query 298 AGGAAATACAGAAACAGCATAAGACCGAACCGAGTGACTGGTTCCGGTTTCTGGAAAGCC 357
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 300 AGGAAATATAGAAACAGCATAAGACCGAACCGAGTGACTGGTTCTGGTTTCTGGAAAGCC 359
Query 358 ACAGGGATAGACAAGCCTGTCTATTCCGATGGATCCAACAAAGCCGTGATCGGTCTAAAG 417
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 360 ACAGGGATAGACAAGCCTATCTATTCCGATGGATCCAATAAAGCCGTGATCGGTCTAAAG 419
Query 418 AAGACACTCGTTTATTACCTAGGAAGCGCCGGGAAAGGAAACAAGACGGATTGGATGATG 477
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 420 AAGACACTCGTTTATTACCTTGGAAGCGCCGGGAAAGGAAGCAAGACGGATTGGATGATG 479
Query 478 CACGAGTTTCGTCTCCCTACAGCCAATGACACAATCCCCGGTGGCCCTACACACTCTAAC 537
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CACGAGTTTCGTCTCCCCACAGCCAATGACACAATCCCCGGTGGCCCTACACACTCTAAC 539
Query 538 CCTACTCCAACTTCCTTGCTACACGCGGAAGTATGGACGTTATGCCGGATATTTAAGAGA 597
|||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 540 CCTACTCCAACTTCCTTGCTACACGCAGAAGTATGGACGTTATGTCGGATATTCAAGAGA 599
Query 598 ACTGTGTCTAGTCGAAAATACACTCCGGACTGGAGAGAATTAGCAAATGGCAAACGTGTG 657
| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AATGTGTCGAGTCGAAAATACACTCCGGACTGGAGAGAATTAGCAAATGGCAAACGTGTG 659
Query 658 AAGCAGCAACAATCTAATTACCAAGAAGCTTAT-ATA--AATTTTGGGGACAATGAAAGT 714
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 660 AAGCAGCAACAATCTAATTACCAAGAAGCTTATTATATCAATTTTGGGGACAATGAAAGT 719
Query 715 AGTAGTAGTACCAACGTGATGAACGTTAGGGAAGGCAAAGGGAACTACGAGAGAAGCGTT 774
||||||| |||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 720 AGTAGTA---CCAATGTGATCAACGTAAGGGAAGGCAAAGGGAACTACGAGAGAAGCGTT 776
Query 775 TTCCAGCTTCAGCAAACGCCTTATCAACATCAAAACCAGCCAATTCTCATGGACACCACA 834
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TTCCAGCTTCAACAAACGCCTTATCAACATCAAAACCAGCCAATTCTCATGGACACCACA 836
Query 835 CACGTTGAT--T-CGTTTCAACATTTCTCCAACGATAACATTCACCATGAAACCTACGAG 891
||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 837 CACGTTGATAATTCGTTTCAACATTTCTCCAACGATAACATTCACGAAGAAACCTACGAG 896
Query 892 ACTTGGCCGGACGAGCTTCGATCGGTTGTGGAATTTGCTTTCCCACCTTCTTTTCTTAGT 951
| |||| | |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 897 AATTGG--G-ACGAGCTTCGATCGGTTGTGGAATTTGCTTTCCCACCTTCTTCTCTTAGT 953
Query 952 TAG 954
|||
Sbjct 954 TAG 956
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5