BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12920.1
Length=1437
Score E
Sequences producing significant alignments: (Bits) Value
Ahg478654 jgi|Araly1|478654|fgenesh2_kg.3__1355__AT3G12920.1 2128 0.0
> Ahg478654 jgi|Araly1|478654|fgenesh2_kg.3__1355__AT3G12920.1
Length=1446
Score = 2128 bits (1152), Expect = 0.0
Identities = 1366/1462 (93%), Gaps = 43/1462 (3%)
Strand=Plus/Plus
Query 1 GCTTTGATATTTGTTTTTTAGTTTCT--C-CT-TCTCTCTGCAG-AAACCGTAATTAAAA 55
|||||||||||||||||||||||||| | || ||||||||| | ||||||||||| |||
Sbjct 1 GCTTTGATATTTGTTTTTTAGTTTCTCCCTCTATCTCTCTGC-GAAAACCGTAATT-AAA 58
Query 56 ACCCCCCAC-A-AC-T--TCTTCAACATAACGTCTTCTTCTTCCATCTTTCGTTGCATTC 110
|||||||| | || | ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 59 CCCCCCCACAACACATCCTCTTCAACATAACTTCTTCTTCTTCCATCTTTCGTTGCTTTC 118
Query 111 ACGTTTTTAAAGGTTCTCTGAATCA-CTCCATTAAAAATAGCTTTGAACAAGTTTTC-TC 168
||||||||| ||||||||||||||| | ||||| ||||||||||||||| ||||||| |
Sbjct 119 ACGTTTTTAGAGGTTCTCTGAATCACCCCCATT-AAAATAGCTTTGAACGAGTTTTCAT- 176
Query 169 AATAGTCAACAAAAACAATGGCCGTTGAAGCTCACCATCTAAATCCTCTGTTCTCTTCCA 228
|||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 177 AATAGTCAAC--AAACAATGGCCGTTGAAGCTCACCATCTTAATCCTCTGTTTTCTTCCA 234
Query 229 ACAGAGAAATGATTCATCCCGTTGAAGCAAGCGG-TGTAGTCTATAACACCCAGATGAGA 287
|||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct 235 ACAGAGAAATGATTCATCCCGTTGAAGCAAACGGCT-TAGTCTATAACACCCAGATGAGA 293
Query 288 TACGGCACCGTTCCGACGTTTAACCCCACCGTGGAATGTCAAACTTCTCTGTTTAACCCA 347
|||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||
Sbjct 294 TACGGCACCGTTCCGACGTTTAACCCTACTGTAGAATGTCAAACTTCTCTGTTTAATCCA 353
Query 348 ATCTACAACATCTCACCAGTCGATCGTTTGGTTCATCAATCCATGAAACCAACGATACAG 407
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 354 ATCTACAACATCTCACCAGTTGATGGTTTGGTTCATCAATCCATGAAACCAACGATACAA 413
Query 408 TCCGTTGATAGTTCTCTCACATTCAACAGCGACAACAACGTCGATTTTCTTCGTCCTGTG 467
||||||||||||||| ||||||||||||||| | || |||||||||||||||||||
Sbjct 414 TCCGTTGATAGTTCTGTCACATTCAACAGCG---AGAA---CGATTTTCTTCGTCCTGTG 467
Query 468 TCGTCGAGAAAACGTTCTAGAGAAGAATCCGTTGTTCTAAACCCTTCCGCTTATATGCAA 527
||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||
Sbjct 468 TCGTCGAGAAAACGTTCTAGAGAAGAATCTGTTGTTTTAAATCCTTCCGCTTATATGCAA 527
Query 528 ATTCAGAAAAATCCCACCGATCCTCTTATGTTCCTTGGCCAAGACTTGTCTTCTAACGTT 587
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 528 AGCCAGAAAAATCCCACGGATCCTCTCATGTTCCTTGGCCAAGACTTGTCTTCTAACGTC 587
Query 588 CAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATG 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 588 CAACAACATCATTTCGATATCGATCGTTTGATCTCTAATCACGTTGAGAGAATGAGAATG 647
Query 648 GAGATTGAAGAGAAGAGAAAAACACAAGGGAGAAGGATAGTGGAAGCCGTCGAACAAGGT 707
|| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||
Sbjct 648 GAAATTGAAGAGAAGAGAAAATCACAAGGGAGGAGGATAGTGGAAGCCGTGGAACAAGGT 707
Query 708 TTGATGAAGACACTAAGAGCCAAAGACGATGAGATAAATCACATCGGGAAACTAAACCTC 767
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 708 TTGATGAAGACACTAAGAGCCAAAGACGAAGAGATAAATCACATCGGGAAACTAAACCTA 767
Query 768 TTTCTCGAAGAGAAGGTTAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCA 827
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTTCTAGAAGAGAAGGTCAAGTCTTTGTGCGTAGAGAATCAGATATGGCGTGACGTGGCA 827
Query 828 CAGTCTAATGAAGCCACCGTAAACGCCCTACGTTCTAACTTGCAACAAGTTCTCGCAGCC 887
||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 828 CAGTCTAATGAAGCCACCGTAAACGCCCTCCGTTCCAACTTACAACAAGTTCTCGCTGCC 887
Query 888 GTGGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCTGACGACGCACAGTCTTGTTGC 947
|| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 888 GTTGAGCGTAACCGGTGGGAGGAGCCGCCCACGGTGGCAGACGACGCGCAGTCTTGTTGC 947
Query 948 GGTAGCAACGACGAAGGTGATAGCGAGGAAGAACGGTGGAAGTTAGCGGGAGAGGCGCAG 1007
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 948 GGTAGCAACGACGAAGGTGATAGCGAGGAAGAGCGGTGGAAGTTAGCGGGAGAGGCGCAG 1007
Query 1008 GATACGAAAAAGATGTGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAA 1067
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1008 GATACGAAAAAGATGCGTAGGGTAGGGATGAGTATGTGTAGAAGCTGTGGGAAAGGAGAA 1067
Query 1068 GCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTTCTGTGTGTGGCTCTTCA 1127
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1068 GCAAGTGTGTTACTGTTACCGTGCAGACACATGTGTCTATGTACTGTGTGTGGTTCTTCA 1127
Query 1128 CTCAACACTTGTCCTATATGTAAATCTCCAAAGACCGCTAGTCTACATGTTAATCTTTCC 1187
|||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1128 CTCAACACTTGTCCCATTTGTAAATCTCCAAAGAACGCTAGTCTACATGTTAATCTTTCC 1187
Query 1188 TCTTAG-ACCTAACC-AATACCAGTAAAAT-GTAAATGCCCCCaaaaaaaGTAAATAGTA 1244
|||||| | ||||| |||||||||||||| ||| ||| ||| |||||||||||||||||
Sbjct 1188 TCTTAGTA--TAACCCAATACCAGTAAAATTGTATATGTCCC-AAAAAAAGTAAATAGTA 1244
Query 1245 GACAAAAGTTTCTTGGTT-AAA-AA--CTGTTCATTCttttttt-----GT-TT-GGATG 1293
|| ||||||| ||||||| ||| || ||||||||||||||||| || || ||||
Sbjct 1245 GAAAAAAGTTCCTTGGTTGAAAGAAAACTGTTCATTCTTTTTTTCTCTCGTCTTTGGATT 1304
Query 1294 GTGATGATGATGATGGAACACGAATCTTTGACATATGTGTCAGATCTTTAAATTTCGTAA 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305 GTGATGATGATGATGGAACACGAATCTTTGACATATGTGTCAGATCTTTAAATTTCGTAA 1364
Query 1354 GGGGTTCACGAGGGACCTCTGTTGCTAAAAATCGTGGGTTAGGTTTATACCCACTTTCAA 1413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 GGGGTTCACGAGGGACCTCTGTTGCTAAAAATCGTGGGTTAGGTTTATACCCACTTTCAA 1424
Query 1414 TGTCATTTCCCATCTTTGTATG 1435
||||||||||||||||||||||
Sbjct 1425 TGTCATTTCCCATCTTTGTATG 1446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53745335695
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5