BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT3G12930.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg929016 jgi|Araly1|929016|scaffold_301473.1 1003 0.0
> Ahg929016 jgi|Araly1|929016|scaffold_301473.1
Length=733
Score = 1003 bits (543), Expect = 0.0
Identities = 687/752 (91%), Gaps = 27/752 (4%)
Strand=Plus/Plus
Query 46 ACCAGCGAGATTAATGGCATCTTCCACCGGTCTCACCGTCGCCGGAGCTCTGCTTGCCGG 105
||||||||||||||||||||||||||||||||||| || | | | |||||
Sbjct 9 ACCAGCGAGATTAATGGCATCTTCCACCGGTCTCA------CC---G---T-C--GCCGG 53
Query 106 AGATTTTCGATTACCAGCTGTATCGTCTCTAATACCCAGAAAGACTTCTTCTTCATTGTC 165
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 54 AGATTTTCGATTACCAGCTATATCGTCTCTAATACCCAGAAAGACTTCTTCTTCATTGTC 113
Query 166 ATGCCTTAGCAACAGAGATTTATCGTCTCCTTATAATTGCTGTTGGCGACTATCCAGAGG 225
|||||| | |||||||| || |||||||||||||||||||||||||||||
Sbjct 114 ATGCCTCAACAACAGAG------CG------TATAATTGCTGTTGGCGACTATCCAGAGG 161
Query 226 CAAAATTTTGACTTCTCTCAGTAACTCACGGAAATTTGCTGTGGGAAAGGAAGCAGAAGA 285
|| ||||||||||||||||||||| ||||| | | | ||||||||||||||||| |||||
Sbjct 162 CAGAATTTTGACTTCTCTCAGTAAATCACGCAGACTCGCTGTGGGAAAGGAAGCGGAAGA 221
Query 286 TGGGTTTCTATCGAATGTGAGCGAAGATACTGATGAGATGTTCGACGACTTGTTCAACAA 345
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 222 TGGGTTTCTCTCGAATGTGAGTGAAGATACCGATGAGATGTTCGACGACTTGTTCAACAA 281
Query 346 ATATGGGAAGGTTGTTTTTAGAAGCACTGATGTTAAGTCTCCAACAGCTGAGGTTGACGA 405
||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||| ||
Sbjct 282 ATATGGGAAGGTTGTTTTTAGGAGCAATGATGTAAAGTCTCCAACAGCTGAGGTTGATGA 341
Query 406 TGATGCAGAGAGTTTAGCATTTGCTGTTGAATTGGCTAAAGTTGCGAGTGATGTGAAAGC 465
||| || || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TGACGCTGAAAGTTTAGCTTTTGCTGTTGAATTGGCTAAAGTTGCGAGTGATGTGAAAGC 401
Query 466 TGGAGATATTAAGGTCCTCTTTGTCAAGCCTCTTGTTTACTGGACTCGGTTTTTCATCAT 525
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 402 TGGAGACATTAAGGTCCTCTTTGTGAAGCCTCTTGTCTACTGGACTCGGTTTTTCATCAT 461
Query 526 TGCCACTGCGTTTTCCCGCCCTCAAATTGATGCAATAGGATCCAGGATGAGAGACCTGGC 585
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 462 TGCCACTGCGTTTTCCCGCCCCCAAATTGATGCAATCGGATCTAGGATGAGAGACCTGGC 521
Query 586 TGAGAAGAAGTACGGAAAAGTTGCTAATGGAGATGTAAAGCCAAATTCGTGGACGTTGTT 645
|||||||||||| || || |||||||| |||||||||||||||||||||||||| |||||
Sbjct 522 TGAGAAGAAGTATGGTAAGGTTGCTAACGGAGATGTAAAGCCAAATTCGTGGACATTGTT 581
Query 646 AGATTTTGGTGATGTGGTGATCCATTTATTCTTACCTCCGCAAAGGACATTCTATAACTT 705
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 582 AGATTTTGGTGATGTTGTGATCCATTTATTCTTACCTCCGCAAAGGACATTCTATAACTT 641
Query 706 GGAAGACTTTTACGGGAATGCTATGCAAATTGAACTTCCCTTTGAGGATCAGTCACAACC 765
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 642 GGAAGACTTTTACGGGAATGCTATGCAAATTGAACTTCCCTTTGAGGATCAGTCACCGCC 701
Query 766 ACGGAACTGATATGATGAGACAGTTTGTTCCa 797
| ||| |||||||||||||||||| |||||||
Sbjct 702 AAGGAGCTGATATGATGAGACAGTCTGTTCCA 733
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5